Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   3.4  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   3.4  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   3.4  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   3.4  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
           protein T24C4.8 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 FKDFWISWHSGKFQYGL 364
           F   WISW  GKF YG+
Sbjct: 23  FTKLWISWSIGKFSYGI 39


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 170  TTYNLLFKISTPSGTISAVYWGCI*TCRLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
            T YN+  +  T SG    + WG   T    + +++   N+ P T  + ++  W   HSG
Sbjct: 3534 TIYNITVQAGTNSG-YGHILWGTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRSHSG 3591


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 170  TTYNLLFKISTPSGTISAVYWGCI*TCRLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
            T YN+  +  T SG    + WG   T    + +++   N+ P T  + ++  W   HSG
Sbjct: 3534 TIYNITVQAGTNSG-YGHILWGTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRSHSG 3591


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 170  TTYNLLFKISTPSGTISAVYWGCI*TCRLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
            T YN+  +  T SG    + WG   T    + +++   N+ P T  + ++  W   HSG
Sbjct: 3534 TIYNITVQAGTNSG-YGHILWGTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRSHSG 3591


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 170  TTYNLLFKISTPSGTISAVYWGCI*TCRLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
            T YN+  +  T SG    + WG   T    + +++   N+ P T  + ++  W   HSG
Sbjct: 3534 TIYNITVQAGTNSG-YGHILWGTYSTLAPGQRHILRLLNRTPTTLNVAWEPVWGRSHSG 3591


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -1

Query: 496 EYWGSFNHPSNLSFIYHCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIF 317
           +Y GS +    LSF+ HC     +        +FY  H   +   T+LK + +   P + 
Sbjct: 81  KYTGSLSCKVGLSFLLHCLTHSVWSLLISFGYRFYILHNPALSRLTLLKITIMFYIPSLV 140

Query: 316 ELDKRSWWVFV 284
           +     W +FV
Sbjct: 141 QA-LTYWTLFV 150


>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = +2

Query: 164 SRTTYNLLFKISTPSGTISAVYWG-----CI*TCRLLEGNV-VDYYNKDPPTSFIE 313
           S TTY+ + +I T     S ++WG     C+ T  +++G V +++YN  P  + I+
Sbjct: 35  SLTTYHGMIRIYTSETWPSRIFWGVVVVTCV-TLFMIQGGVLLEFYNSHPTATKID 89


>U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical
           protein T10E9.8 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 353 QYGLCPNIEPMRCIKLQNAKKIGF--VSFHIPTMIDEAEVRWVIERPPIFLNSLIAKVIR 526
           Q     N  P  C +L +  K     VS  I TM+ E  + +++E    F++S I +++ 
Sbjct: 2   QISTVSNHRPAACFELFDTPKAALLTVSMQILTMLLEVAIYFILESKGFFVSSGIFRMVL 61

Query: 527 KLRVVNYVG 553
                 Y+G
Sbjct: 62  LPVATVYIG 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,560,044
Number of Sequences: 27780
Number of extensions: 382016
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)