Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 287 CCNNQQHYPLIVYKF 243
           CC N   YP+IVY+F
Sbjct: 233 CCPNDT-YPMIVYEF 246


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 IFGYRGTVENFNMVCVLTL 377
           IFGY+GT  N  +V V T+
Sbjct: 282 IFGYQGTYVNLVIVKVFTI 300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 117 RANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQLYIGD 236
           R NS       S  +   P  T Y KFP   E+Y  Y  D
Sbjct: 134 RMNSGMFTTAFSIAVLYRPD-TKYMKFPAIYEIYPNYFFD 172


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 117 RANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQLYIGD 236
           R NS       S  +   P  T Y KFP   E+Y  Y  D
Sbjct: 134 RMNSGMFTTAFSIAVLYRPD-TKYMKFPAIYEIYPNYFFD 172


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 251 RLLEGNVVDYYNKDPPTSFIEFKDFWISWHSG 346
           +L E   + +  +     F+   D WISW  G
Sbjct: 363 QLREEGWIHHLARHAVACFLTRGDLWISWEEG 394


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 637 IHFNSLTPGKY 669
           IHF  + PGKY
Sbjct: 543 IHFKQIEPGKY 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,928
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)