Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0809.Seq
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17710.1 68416.m02260 F-box family protein contains F-box dom...    32   0.34 
At5g61340.1 68418.m07697 expressed protein                             29   3.1  
At3g51420.1 68416.m05632 strictosidine synthase family protein s...    28   7.2  
At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containi...    27   9.6  

>At3g17710.1 68416.m02260 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 368

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/68 (26%), Positives = 23/68 (33%)
 Frame = -1

Query: 493 YWGSFNHPSNLSFIYHCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIFE 314
           YW + NHP  L +     D        FC+L      G N     + K        + FE
Sbjct: 205 YWLAHNHPETLEYFIETFDFSMEIFKPFCLLPCRKDFGSNELVLAVFKEDRFSLLKQCFE 264

Query: 313 LDKRSWWV 290
             K   WV
Sbjct: 265 TTKIEIWV 272


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 484 SFNHPSNLSFIYHCRDMKTYKTNFFCIL 401
           S NH ++ S +++ R +KTY  NFF +L
Sbjct: 111 SNNHSADSSSVFYLRLLKTYVCNFFFLL 138


>At3g51420.1 68416.m05632 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 370

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 711 SMSPRHKHFVCCSKVFSRCQR 649
           SMSP   HFV C  +  RC +
Sbjct: 222 SMSPDQTHFVFCETIMRRCSK 242


>At1g08070.1 68414.m00883 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 741

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 565 LSFLPNVVHHPQFPYHFCD*AI*EYWGSF-NHPSNLSFIYHCRDMKTYKTNFFCILKFYT 389
           LS  P  V    +P+HF   +    + S  NHPS LS +++C+ +++ +     ++K   
Sbjct: 3   LSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPS-LSLLHNCKTLQSLRIIHAQMIKI-G 60

Query: 388 SHGFNVRTQTILKF 347
            H  N     +++F
Sbjct: 61  LHNTNYALSKLIEF 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,335,362
Number of Sequences: 28952
Number of extensions: 345262
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)