Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    29   0.92 
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    28   1.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.8  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   6.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   6.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   8.6  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +3

Query: 105 KPTPQISGRSSTFSCNILSTSLSRCCISCFGCRVL*LIKRTSGS 236
           KP   I  + S F    + +SLSR  + CFGC  L L K TSGS
Sbjct: 89  KPILSIQPKLSFF----IDSSLSRLLLLCFGC--LKLSKSTSGS 126


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  TWRMSQRKPIRSAQYPPKPTPQISGRSST 140
           +W + +R+P   A   P+ TP  S RS T
Sbjct: 292 SWNLLRRRPTNDASTSPRSTPSASPRSIT 320


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 457  WENPGVTQLNRLAAHPPSPAGVIAKRPAPIALPNS 561
            W N   + L+  AA PP P   + K   P A P S
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPPMALPKAGPPSAAPTS 1902


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 229 DVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAE 86
           D   +S S  H K  +    K     + LN+ + P +C   L   W+E
Sbjct: 90  DAVFVSESNHHEKEILHRTCKRY--RIPLNIIDNPSLCSFTLPATWSE 135


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 47  EDHLADVAKKTNPFRPVSAQANAAN 121
           ++HL D+  +TN F  + +Q N  N
Sbjct: 451 KEHLIDIMSQTNSFERLDSQVNDTN 475


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  NQSVPPSIRPSQRRKLADARQ 138
           N   PP +RPS   KL D RQ
Sbjct: 579 NVGPPPYVRPSAPSKLPDTRQ 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,553
Number of Sequences: 5004
Number of extensions: 63793
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)