Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.7  
12_02_1074 - 25849280-25849324,25849435-25849506,25849601-258496...    29   5.1  
12_02_0054 - 12943867-12944283                                         28   6.8  
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    28   6.8  
10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869     28   9.0  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    28   9.0  
01_05_0727 - 24639335-24639419,24639605-24639692,24640142-246402...    28   9.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 419 ITIHWPSFYNVV-TGKTLALPNLIALQH 499
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_02_1074 -
           25849280-25849324,25849435-25849506,25849601-25849663,
           25849756-25849865,25850648-25850761,25851601-25851681,
           25851736-25851850
          Length = 199

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 162 TSLSRCCISCFGCRVL*LIKRTSGSINCNCKLSRGYPDC*SQNRVNR*SSLPHISQG 332
           T +    + C GCR L +  R + S+ C+C        C + N V   SS+ H++ G
Sbjct: 65  TGMDIAHLICGGCRTLLMYTRNATSVRCSC--------CDTVNLVRPVSSIAHLNCG 113


>12_02_0054 - 12943867-12944283
          Length = 138

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 593 LQFAIRHSAAQLLGRAIGAGLFAITPAGEG--GCAARRL 483
           ++  +R +A Q L  A+G G+  I P G G  G   RRL
Sbjct: 76  VEACLRVAAGQPLDLAVGEGVMVIVPVGSGEEGSRGRRL 114


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 502 PPSPAGVIAKRPAPIALPNSCAAEWRMANCKR 597
           PPSP     +RP   A P + AA +R   C+R
Sbjct: 49  PPSPTPPARRRPTKPASPPTGAALYRARRCRR 80


>10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869
          Length = 273

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 490 LAAHP-PSPAGVIAKRPAPIALPNSCAAEWRMAN 588
           LA  P PSP G    RPAP++LP      W  A+
Sbjct: 26  LAPSPSPSPPGTGRVRPAPVSLPPRPPLLWAAAS 59


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 496 AHPPSPAGVIAKRPAPIALPNSCAA 570
           A  P+P  V A  P P+A PN C +
Sbjct: 249 APAPAPPPVTAPPPPPVAAPNDCVS 273


>01_05_0727 -
           24639335-24639419,24639605-24639692,24640142-24640225,
           24640263-24640329
          Length = 107

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 125 RTLVNVQLQHFVHFFKQMLHIMFRMPRTV 211
           R  VN   Q+FVHF ++   I+FRM R V
Sbjct: 49  RKEVNSTAQNFVHFTEEEEDIVFRMHRLV 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,361,549
Number of Sequences: 37544
Number of extensions: 464865
Number of successful extensions: 1499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)