Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY078498-1|AAL85487.2| 1507|Homo sapiens zinc finger 298 protein.      31   5.7  
AP001745-1|BAA95527.1|  847|Homo sapiens ZNF298 protein.               31   5.7  
AF276513-1|AAF78093.1|  951|Homo sapiens PR-domain zinc finger p...    31   5.7  

>AY078498-1|AAL85487.2| 1507|Homo sapiens zinc finger 298 protein.
          Length = 1507

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 466 PGVTQLNRLAAHPPSPAGVIAKRPAPIALPNSCAAEWRMA 585
           PG +     A  PP P GV+A+ P  + +P       R+A
Sbjct: 82  PGSSPPRPAAPRPPPPGGVVAEAPGDVVIPRPRVQPMRVA 121


>AP001745-1|BAA95527.1|  847|Homo sapiens ZNF298 protein.
          Length = 847

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 466 PGVTQLNRLAAHPPSPAGVIAKRPAPIALPNSCAAEWRMA 585
           PG +     A  PP P GV+A+ P  + +P       R+A
Sbjct: 82  PGSSPPRPAAPRPPPPGGVVAEAPGDVVIPRPRVQPMRVA 121


>AF276513-1|AAF78093.1|  951|Homo sapiens PR-domain zinc finger
           protein 15 protein.
          Length = 951

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 466 PGVTQLNRLAAHPPSPAGVIAKRPAPIALPNSCAAEWRMA 585
           PG +     A  PP P GV+A+ P  + +P       R+A
Sbjct: 82  PGSSPPRPAAPRPPPPGGVVAEAPGDVVIPRPRVQPMRVA 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,811,967
Number of Sequences: 237096
Number of extensions: 2514867
Number of successful extensions: 10168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10168
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)