Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 262 RESLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWA 89
           ++   LQF D  +  + YS     +  +H +  VD  L+L +     IC +G  GY+A
Sbjct: 470 QQKSMLQFYDYTILWLQYSALLWIYSKRHGMFVVDSSLRLIIKIVFSICSIGFTGYFA 527


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 60  RMSQRKPIRSAQYPPKPTPQISGRSSTFSCNILSTSLSRCCISC 191
           R +Q++P+R +QYP  P PQ +  + T S N          ISC
Sbjct: 163 RSAQQQPLRFSQYPSCPCPQ-NQPACTCSTNNQQNEQILVSISC 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,598,891
Number of Sequences: 27780
Number of extensions: 377915
Number of successful extensions: 1084
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)