Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.32 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.56 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.75 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.75 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 29  REQIRVEDHLADVAKKTNPFRPVSAQAN 112
           R+ IR+ED++A +  K NP +  S  A+
Sbjct: 616 RKLIRIEDNVATLRMKLNPTKAASINAD 643


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  REQIRVEDHLADVAKKTNPFRPVSAQAN 112
           R+ IR+ED +A +  K NP +  S  A+
Sbjct: 563 RKLIRIEDDVATLRMKLNPTKAASINAD 590


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 130 RPLICGVGLGGYWAERIGFLCDIRQVI 50
           R L CG+  G  W ERI    D+ + I
Sbjct: 684 RDLYCGIRAGLSWLERIQIALDVLEGI 710


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 130 RPLICGVGLGGYWAERIGFLCDIRQVI 50
           R L CG+  G  W ERI    D+ + I
Sbjct: 722 RDLYCGIRAGLSWLERIQIALDVLEGI 748


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 216 IKRTSGSINCNC 251
           IKR   S NCNC
Sbjct: 142 IKRVKDSTNCNC 153


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 69   QRKPIRSAQYPPKPTPQISGRS 134
            +R   R  Q PP P P  SG++
Sbjct: 1346 ERTAWRQQQPPPPPPPPSSGQA 1367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,083
Number of Sequences: 438
Number of extensions: 4607
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)