Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0807.Seq
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45207.2 68414.m05186 remorin family protein Since this genom...    30   1.9  
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    28   5.7  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    28   7.5  
At2g46915.1 68415.m05859 expressed protein  and genscan                28   7.5  
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    28   7.5  
At1g28660.2 68414.m03530 lipase, putative strong similarity to l...    27   9.9  
At1g28660.1 68414.m03529 lipase, putative strong similarity to l...    27   9.9  

>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = -2

Query: 607 QNINAYNLPFAIQLRNCWEGRSVRASSLLRQLAKGDVLQGD*VG*RQGFPSHDVVKRRPV 428
           QN+++    F++ LR C E RS R+ +L ++L     +  D        P    VKR  V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176

Query: 427 NCNTTHYRANWVPGTRLNQLHERWQEEK 344
           + N +    +    T L+ + + W  E+
Sbjct: 177 STNKSSVFPSPGTPTYLHSMQKGWSSER 204


>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 345 KQVTNPGLCEEAMIIYLHGFDSNSPGNHEKAYN 247
           K+VT P   EE  I Y  G  S SP    + YN
Sbjct: 476 KEVTRPFTVEEDSIPYQQGASSKSPNRAPEQYN 508


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 66  SQRKPIRSAQYPPKPTPQISGRSST 140
           ++R P+R   +PP P P I  R+S+
Sbjct: 5   NRRNPLRDLSFPPPPPPPIFHRASS 29


>At2g46915.1 68415.m05859 expressed protein  and genscan
          Length = 708

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 91  PSIRPSQRRKLADARQRSVATFCPLL*ADAAYHVSDAAYCSLSSVHPG 234
           PS  PS RR+L   R    ATF P+   D     S+ A  SL+ +  G
Sbjct: 20  PSSSPSLRRRLVRCRLTEAATFSPI---DVVSGESERAVGSLTELKNG 64


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 69  QRKPIRSAQYPPKPTP-QISG-RSSTFSCNIL 158
           Q  P+ S  +PP+P P  +SG  SSTF+ N L
Sbjct: 179 QPVPVGSVTHPPQPVPTSVSGPGSSTFNLNSL 210


>At1g28660.2 68414.m03530 lipase, putative strong similarity to
           lipase [Arabidopsis thaliana] GI:1145627
          Length = 382

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = -2

Query: 259 ESLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERI 80
           E  +LQ + PDV +I Y+  H       L +   +  +     +PL    G+GG +   I
Sbjct: 269 ELKRLQKLYPDVNII-YADYH-----NSLYRFYQEPAKYGFKNKPLAACCGVGGKYNFTI 322

Query: 79  GFLCDIRQVIFNPNLFPYENMEG 11
           G  C    V +  N   Y N +G
Sbjct: 323 GKECGYEGVSYCQNPSEYVNWDG 345


>At1g28660.1 68414.m03529 lipase, putative strong similarity to
           lipase [Arabidopsis thaliana] GI:1145627
          Length = 383

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = -2

Query: 259 ESLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERI 80
           E  +LQ + PDV +I Y+  H       L +   +  +     +PL    G+GG +   I
Sbjct: 270 ELKRLQKLYPDVNII-YADYH-----NSLYRFYQEPAKYGFKNKPLAACCGVGGKYNFTI 323

Query: 79  GFLCDIRQVIFNPNLFPYENMEG 11
           G  C    V +  N   Y N +G
Sbjct: 324 GKECGYEGVSYCQNPSEYVNWDG 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,771,267
Number of Sequences: 28952
Number of extensions: 352425
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)