Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0805.Seq
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 4e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 7e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 9e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 1e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.052
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.21
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.37
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.49
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.5
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (435), Expect = 4e-46
Identities = 80/90 (88%), Positives = 83/90 (92%)
Frame = +3
Query: 240 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 419
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 420 APLNPKANREKMTQIMFETFNTPAMYVAIQ 509
APLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 127 bits (307), Expect = 1e-30
Identities = 59/64 (92%), Positives = 63/64 (98%)
Frame = +2
Query: 509 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 688
AVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERG 197
Query: 689 YSFT 700
Y+F+
Sbjct: 198 YTFS 201
Score = 106 bits (254), Expect = 4e-24
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +1
Query: 103 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +3
Query: 225 RDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 404
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 405 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 509
+LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Score = 85.4 bits (202), Expect = 7e-18
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +2
Query: 509 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 688
AVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +G
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG 197
Query: 689 YSF 697
Y+F
Sbjct: 198 YAF 200
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 109 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 213
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 98.7 bits (235), Expect = 7e-22
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +3
Query: 252 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 428
++VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 429 NPKANREKMTQIMFETFNTPAMYVAIQP 512
N+EK+ + +ET N PA+ ++QP
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 79.4 bits (187), Expect = 5e-16
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = +2
Query: 512 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 691
VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGH 203
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 9e-21
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 431
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 432 PKANREKMTQIMFETFNTPAMYVAIQ 509
P NRE +IMFE+FN +Y+A+Q
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +2
Query: 542 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 685
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 204
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 DGR--YGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 401
DGR +G E +Y +S G + +K I +G V NWD +W + +L+ P EH
Sbjct: 46 DGRRLFGEEYIY-----KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99
Query: 402 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 509
P+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 100 PILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 106 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 207
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 524 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 691
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +3
Query: 225 RDGRYGTEGLYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 401
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 402 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 506
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 121 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 216
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 539 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 697
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 428
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 429 NPKANREKMTQIMFETFNTPAMYVAIQ 509
NP++ R+++ + FE + PA Y+ Q
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 106 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 207
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +2
Query: 548 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 694
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 512 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 682
++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 306 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 473
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 474 TFNTPAMYVAIQP 512
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.7 bits (71), Expect = 0.052
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +3
Query: 252 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH-HTFYNELRVAPEEHPVLLTE--A 422
LYV D++ + ++ P + D + + + +Y L E+HP+LLT+ A
Sbjct: 1360 LYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLA 1419
Query: 423 PLNPKANREKMTQIMFETFNTPAM---YVAIQ 509
L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1420 ALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +2
Query: 524 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 697
+ +G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 338 IPVSDDSVFDGVFEGQDTSFALCLISYIESFCPIPTITP*WRGLPTIEGNTARGASSPAK 159
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 158 PALHIP 141
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 510 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 614
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 498 VAIQPCSRCTRPVVPPVSCWTPATVSPTPCPST 596
V P SR T+P+ S +P VSP PST
Sbjct: 258 VFYNPVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 531 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 623
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 236 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 102
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 408 LLTEAPLNPKANREKMTQIMFETFN 482
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 526 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 678
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 242 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 150
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 461 DH-VRNIQHARHVRRHPAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 613
DH V+N A ++R++ + S +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,661
Number of Sequences: 5004
Number of extensions: 65661
Number of successful extensions: 237
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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