Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0802X.Seq
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 2e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.003
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.019
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.019
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 0.71
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 27 1.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 27 1.6
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 27 2.2
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 3.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 5.0
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 8.7
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 8.7
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 8.7
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 8.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 2e-06
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRN 249
V +KNL P + N+ L+ +F FGKI V VDE G G G V F SA +AI +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
+KNL V +E L F FG I A + DE+GK+ G G V + A A+
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 28 RNSRTLRVRFXPXN-SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGV 204
R R +V N + V +KNL ++ + F FG+I + D+ K G G
Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 305
Query: 205 VEFARKPSALSAI 243
V +A A A+
Sbjct: 306 VNYANHECAQKAV 318
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 61 PXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSA 240
P + + V NLP S+ L F G + RA + + G++ G GVV+F + A S+
Sbjct: 277 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASS 336
Query: 241 I 243
I
Sbjct: 337 I 337
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.3 bits (80), Expect = 0.003
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 7 RELDGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGK 186
R+ G++ TL + + P + + V NL V++E LY++F + + + V D GK
Sbjct: 10 RKAGGQVWEDPTL-LEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK 68
Query: 187 TLGEGVVEFARKPSALSAIR 246
T G G V F L A R
Sbjct: 69 TRGFGFVSFKDSDQFLKAWR 88
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.019
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRN 249
+ V V NL P V+ LLY +F FG+I + E+ VEF A A+ N
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 250 CTKNV 264
++
Sbjct: 66 MNYSI 70
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.019
Identities = 27/59 (45%), Positives = 32/59 (54%)
Frame = +1
Query: 67 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
NS V V L FVS E L F+ FG+I YVK+ GK G G V+F + SA AI
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPP-GK--GCGFVQFVNRQSAEIAI 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.3 bits (60), Expect = 0.71
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALSAIRNC 252
V ++ LPP S+E L FGK+ + +D E G G F + SAL I
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Query: 253 T 255
T
Sbjct: 358 T 358
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 277 HPYAQSLLKALKNLMNSMDILKRIFPRNIQ 366
H Q + K+LKN + +ILK+ PR ++
Sbjct: 403 HIEGQKMSKSLKNFITIKEILKKFTPRQLR 432
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRN 249
++V VKN+PP S+ L + IFG VK E + G V+F A+
Sbjct: 315 TSVFVKNIPPETSDVSLKSAMSIFGP-----VKAIEFARRKGTAYVDFVNHECVQLALNK 369
Query: 250 CTKNVSS 270
T +++
Sbjct: 370 KTLQINN 376
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 360 HPEFTKARELGPRFSELNSFEHEYGTRWKQLH 455
HP REL +F +L F+ E GT K+++
Sbjct: 47 HPNKFAIRELSIKFPQLGCFKEENGTYAKEVN 78
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 40 TLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERG 183
T+ P N + ++N+P V+ ++L + FE F + + RG
Sbjct: 164 TINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRG 211
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 479 LFFLTMKFMQLLPSSSIFMFETI*L*ETWSKLTSFRKFWMFLGKIL 342
LF++ ++ Q+ P++S + T+ + KL S KFW KIL
Sbjct: 849 LFYVAVQ--QIEPTNSQYFLRTLDITLNNEKLKSVAKFWRIYLKIL 892
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 342 KNLPKKHPEFTKARELGPRFSELNSF 419
KNL KK + K +LGPR LN +
Sbjct: 127 KNLFKKEKKQVKPEDLGPRQIILNDY 152
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/68 (20%), Positives = 31/68 (45%)
Frame = +1
Query: 244 RNCTKNVSS*HHPYAQSLLKALKNLMNSMDILKRIFPRNIQNLRKLVSLDHVSQS*IVSN 423
R N+ + + P A LL + + + + +P I+N +++ D S ++ +
Sbjct: 85 RKAIVNLGAGYDPLAFQLLSSHEYNTDDVVFYDVDYPETIENRVQMIRSDSFLSSIVLED 144
Query: 424 MNMELDGS 447
+LDG+
Sbjct: 145 KEFDLDGT 152
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 289 QSLLKALKNLMNSMDILKRIFPRNIQNLRKLVSLDH 396
+ LLK+L N +++M + + +I+ LRKL S ++
Sbjct: 382 RKLLKSLTNSLSTMALPDSLISLHIELLRKLCSSEN 417
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 339 EKNLPKKHPEFTKARE 386
E+N+PKK P+F + R+
Sbjct: 252 EENIPKKKPDFNELRK 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,204
Number of Sequences: 5004
Number of extensions: 35701
Number of successful extensions: 145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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