Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0802X.Seq
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 32 0.32
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 0.42
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.73
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071) 27 9.0
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 82.2 bits (194), Expect = 2e-16
Identities = 42/88 (47%), Positives = 60/88 (68%)
Frame = +1
Query: 1 AKRELDGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDER 180
AK LD R RTLRVRF +A+RVKNL V+NELL ++F FG +ERA V D R
Sbjct: 103 AKAGLDMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVR 162
Query: 181 GKTLGEGVVEFARKPSALSAIRNCTKNV 264
G++ G G+VEF+RK +A +A++ ++++
Sbjct: 163 GRSKGHGIVEFSRKNNAHNAMQKISESL 190
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/74 (37%), Positives = 43/74 (58%)
Frame = +3
Query: 249 LHEKCFFLTSSLRPVIVESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHE 428
+ E F L + RP+ VE +E+ D+ DG EK++ ++ + K RE+ P F+ +FE E
Sbjct: 186 ISESLFLLGRTPRPISVEQYEQEDDEDGLVEKSV-ERQTGYQKEREVPPHFATPGTFESE 244
Query: 429 YGTRWKQLHELHRQ 470
+ RWK L EL Q
Sbjct: 245 WAQRWKALGELETQ 258
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 34.7 bits (76), Expect = 0.045
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 61 PXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALS 237
P S V V NLP ++N L++ FE +GK+ + + D E ++ G + F + SA +
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQN 66
Query: 238 AIRNCTK 258
A+ K
Sbjct: 67 AVAAVNK 73
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAY-VKVDERGKTLGEGVVEFARKPSALSAIR 246
+ V+++ LP S E + + F + + +DE GKT GEG VEFA A A++
Sbjct: 38 AVVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQ 97
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.9 bits (69), Expect = 0.32
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 AVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALSAIRN 249
+V V N+P S E L F G + + D E GK G G E+ + +ALSA+RN
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +1
Query: 67 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
N +V V+NL S + L F +GK+ A D K +GEGVVEF K +AI
Sbjct: 797 NYSVIVENLSSRTSWQDLKDYFRKYGKVTYA----DAHKKRIGEGVVEFESKDDLNTAI 851
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYV--KVDERGKTLGEGVVEFARKPSALSAI 243
+ + V+NLP +++ +FE G ++R ++ D + + G G V FA + AL A
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAK 79
Query: 244 RN 249
N
Sbjct: 80 DN 81
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYV---KVDERGKTLGEGVVEFARKPSALSA 240
S + ++NL + +L +F FG++ A V KV R + +G G V+F A A
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 241 I 243
+
Sbjct: 307 L 307
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.9 bits (64), Expect = 1.3
Identities = 31/108 (28%), Positives = 42/108 (38%)
Frame = +1
Query: 31 NSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVE 210
NS T P + V LP + LY+ F +G I +K+D+ G G V
Sbjct: 259 NSYTNLSGLTPQGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLDK-----GYGFVN 313
Query: 211 FARKPSALSAIRNCTKNVSS*HHPYAQSLLKALKNLMNSMDILKRIFP 354
+ A AI C N + H Y++ K LK S R FP
Sbjct: 314 MSNYEEACHAI--CCLNGTPQHGKYSRFPSKHLKTTNLSKFENNRSFP 359
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCTK 258
V NLP + F G +++ + + GK G G VE+ ++ SA +A+ K
Sbjct: 175 VSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDK 233
>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 88 FLHALHYCXXXTLLSGFYCSSIFHPIHVL 2
FLH ++Y LL YC+ I + +HV+
Sbjct: 69 FLHVMYYARIPYLLHVMYCTRITYLLHVM 97
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 88 FLHALHYCXXXTLLSGFYCSSIFHPIHVL 2
FLH ++Y LL YC+ I + +HV+
Sbjct: 33 FLHVMYYTRIPYLLHVMYCTRITYLLHVM 61
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 97 PFVSNELLYRSFEIFGKIERAYVKVDERGKT---LGEGVVEFARKPSALSAIRNCTK 258
P V +++ + SFE+ + R VKV+ +G+T E VV A +P + TK
Sbjct: 81 PGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGRPKVKVEYKGETK 137
>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
Length = 210
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 115 LLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
L Y E+FG + A + D+ +G G V F S ++A+R
Sbjct: 115 LAYIMNELFGGVVYAGIDTDKHRYPIGSGRVTFDNHKSFMNAVR 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,127
Number of Sequences: 59808
Number of extensions: 229026
Number of successful extensions: 645
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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