Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0802X.Seq
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 90 1e-18
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 90 1e-18
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 46 2e-05
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 43 1e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 43 1e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 43 1e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 35 0.030
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 31 0.49
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 31 0.49
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 29 2.6
Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical pr... 27 6.0
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 AKRELDGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDER 180
AK +DG++ + R +RVRF +A+RVK L P VSNE+LY +F FG +ERA VDE+
Sbjct: 166 AKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEK 225
Query: 181 GKTLGEGVVEFARKPS---ALSAIRN 249
G+ GEG+VEF RKP+ A++AIR+
Sbjct: 226 GRPTGEGIVEFERKPNCNEAMAAIRD 251
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/74 (44%), Positives = 49/74 (66%)
Frame = +3
Query: 249 LHEKCFFLTSSLRPVIVESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHE 428
+ +K F LT+S +P+I E E DE DG E+ +P+ P +K RELGPRF NSFE+
Sbjct: 249 IRDKVFLLTASPKPLICEVLEPRDEDDGLAERMIPRT-PGLSKERELGPRFPTPNSFEYV 307
Query: 429 YGTRWKQLHELHRQ 470
YG +WK+L+ + ++
Sbjct: 308 YGMKWKELYVVEQK 321
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 AKRELDGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDER 180
AK +DG++ + R +RVRF +A+RVK L P VSNE+LY +F FG +ERA VDE+
Sbjct: 166 AKEAIDGRIIHGRQVRVRFAVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEK 225
Query: 181 GKTLGEGVVEFARKPS---ALSAIRN 249
G+ GEG+VEF RKP+ A++AIR+
Sbjct: 226 GRPTGEGIVEFERKPNCNEAMAAIRD 251
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/74 (44%), Positives = 49/74 (66%)
Frame = +3
Query: 249 LHEKCFFLTSSLRPVIVESFEEPDEFDGYPEKNLPKKHPEFTKARELGPRFSELNSFEHE 428
+ +K F LT+S +P+I E E DE DG E+ +P+ P +K RELGPRF NSFE+
Sbjct: 249 IRDKVFLLTASPKPLICEVLEPRDEDDGLAERMIPRT-PGLSKERELGPRFPTPNSFEYV 307
Query: 429 YGTRWKQLHELHRQ 470
YG +WK+L+ + ++
Sbjct: 308 YGMKWKELYVVEQK 321
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 363 PEFTKARELGPRFSELNSFEHEYGTRWKQLHELHRQ 470
P +K RELGPRF NSFE+ YG +WK+L+ + ++
Sbjct: 6 PGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQK 41
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 67 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
N + +KNL + N+ +Y +F +FG I V D+ G + G G V F + SA +AI
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCT 255
V VKN + E L F FG+I A V D +GK G G V FA + +A A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 256 KNV 264
++
Sbjct: 300 DSI 302
Score = 36.3 bits (80), Expect = 0.013
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
VKN+ ++++ L F FG I A V VDE G++ G G V F + A +A+
Sbjct: 347 VKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 400
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 67 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
N + +KNL + N+ +Y +F +FG I V D+ G + G G V F + SA +AI
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCT 255
V VKN + E L F FG+I A V D +GK G G V FA + +A A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 256 KNV 264
++
Sbjct: 300 DSI 302
Score = 36.3 bits (80), Expect = 0.013
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
VKN+ ++++ L F FG I A V VDE G++ G G V F + A +A+
Sbjct: 347 VKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 400
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+KNL + N+ +Y +F +FG I V +DE G + G G V F + +A +AI+
Sbjct: 124 IKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+KNL + N+ +Y +F +FG I V +DE G + G G V F + +A +AI+
Sbjct: 61 IKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 115
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+KNL + N+ +Y +F +FG I V +DE G + G G V F + +A +AI+
Sbjct: 124 IKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQ 178
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 35.1 bits (77), Expect = 0.030
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALSAI 243
V V +L VSNELL +F FG++ A V D + K+ G G V F K +A +AI
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAI 193
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 61 PXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSA 240
P + + NL V + LY F + GKI ++D+ GK+ G V+++ A+ A
Sbjct: 185 PLCERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQA 244
Query: 241 I 243
+
Sbjct: 245 V 245
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 277 HPYAQSLLKALKNLMNSMDILKRIFPRNIQNLRKLVSLDHVSQS*IVSNMNMELDG 444
H Y + L K N + +D + RN+ NLR ++ ++ + S VS ++ + G
Sbjct: 212 HRYQRDLKKKEDNFLMEVDTFQATETRNMSNLRDVLEIESSNMSEAVSRLDAAIKG 267
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 31.1 bits (67), Expect = 0.49
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 277 HPYAQSLLKALKNLMNSMDILKRIFPRNIQNLRKLVSLDHVSQS*IVSNMNMELDG 444
H Y + L K N + +D + RN+ NLR ++ ++ + S VS ++ + G
Sbjct: 212 HRYQRDLKKKEDNFLMEVDTFQATETRNMSNLRDVLEIESSNMSEAVSRLDAAIKG 267
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 178 RGKTLGEGVVEFARKPSALSAIRNCTKNVSS 270
RG+T GE VV FARK + C N +S
Sbjct: 58 RGETFGESVVPFARKKRQTTRPGECVCNSNS 88
>Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical
protein T01H3.3 protein.
Length = 599
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 398 TWSKLTSFRKFWMFLGKILFRISIEFIRFFKAFNNDWA 285
T +KL + K MFL +L ++IEF F + + WA
Sbjct: 541 TENKLAEWMKVTMFLFFVLSAVAIEFAVFGRGKSASWA 578
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,197,518
Number of Sequences: 27780
Number of extensions: 189793
Number of successful extensions: 601
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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