Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0802X.Seq
(510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 44 5e-05
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 42 2e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 42 3e-04
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 39 0.002
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.004
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.009
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.021
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 35 0.028
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.028
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.028
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 35 0.037
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 35 0.037
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.11
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.15
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.20
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 32 0.26
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.34
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 0.45
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.45
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.0
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti... 30 1.0
At1g04440.1 68414.m00435 casein kinase, putative similar to case... 30 1.0
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 29 1.4
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont... 29 1.4
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.4
At1g24100.1 68414.m03041 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.8
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 3.2
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 3.2
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 3.2
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 28 3.2
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 27 7.3
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 7.3
At1g73240.1 68414.m08476 expressed protein 27 7.3
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 7.3
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 27 9.7
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 27 9.7
At3g05650.1 68416.m00629 disease resistance family protein conta... 27 9.7
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 44.4 bits (100), Expect = 5e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCT 255
V VKNLP V+N +L F+ FG I V E GK+ G G V+F ++ +A +AI+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 256 KNVSS*HHPYAQSLLK 303
+ + Y +K
Sbjct: 174 STIVADKEIYVGKFMK 189
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
S + VKN+ V+ E L + F G I + DE+GK+ G G V F+ A+ A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Score = 30.3 bits (65), Expect = 0.79
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 37 RTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFA 216
+T RV+ + + +KNL VS +LL F FGKI + DE G V F
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249
Query: 217 RKPSALSA 240
A A
Sbjct: 250 NPEDARRA 257
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
+AV VKNLPP V+ + + +F+ FG I+R V+V RG G V+F +A A+
Sbjct: 1196 AAVHVKNLPPNVTTDWVENAFKQFGPIKRGGVQVSNRGVGNWFGNVKFVHAAAAERAV 1253
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1
Query: 67 NSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
N+A+ VKNLP + L+ +F+ FG+I R V+V + ++ G VEF + +A AI+
Sbjct: 1075 NAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNK-RSFSYGFVEFKEENAAQRAIK 1133
Score = 32.7 bits (71), Expect = 0.15
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKV-DERGKTLGEGVVEFARKPSALSAIRNC 252
+RVK+LPP + L+ F+ FG I++ ++V + VEF +A AI+
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQAS 611
Query: 253 TKNVSS*HHPYAQ 291
NV H Y +
Sbjct: 612 PLNVDG-HTTYVE 623
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 AKRELDGKLRNSRTLRVRFXPXNSA-VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDE 177
++RE + ++R + L+ S+ + VKNL P +S+E L F FG + + V D
Sbjct: 108 SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 167
Query: 178 RGKTLGEGVVEFARKPSALSAI 243
G + G G V FA A A+
Sbjct: 168 NGTSKGSGFVAFATPEEATEAM 189
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRN 249
V VKNL +++ L +F +GKI A V D GK+ G G V F A A+ +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 73 AVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGE-GVVEFARKPSALSAIRN 249
A+ +KNLP ++ E L FE GKI + + + GK G V +A + S + A++N
Sbjct: 35 ALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 94
Query: 250 CTKNVSS*HHPYAQSLLKALKNLMNSMDILKRIFP 354
T+ Y+Q L+ A + M ++ + P
Sbjct: 95 -TERYEIDASAYSQPLMHAGGHAAGGMSMMPIMLP 128
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSA 231
+++ + NL VS E+L+ F FGK+ R+ + D RG++ G +EF SA
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSA 70
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
V NL +S + L + FE FG +E V DE G G G V+FAR A +A+
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 35.5 bits (78), Expect = 0.021
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 61 PXNSAVRVKNLPPFVSNELLYRSFEIFGKI-ERAYVKVDERGKTLGEGVVEFARKPSALS 237
P S + V+NLP S + L R F FG+I E +K + ++ G ++F + A
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96
Query: 238 AIRNCTKNV 264
AI + +
Sbjct: 97 AIETMDRRM 105
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.1 bits (77), Expect = 0.028
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+ NL VSNE + F G ++R + D G++ G V F+R+ AL+A++
Sbjct: 112 ISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.1 bits (77), Expect = 0.028
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 AVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGE-GVVEFARKPSALSAIRN 249
A+ +KNLP ++ E L FE GKI + + + GK G V +A + S + A++N
Sbjct: 269 ALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 328
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.1 bits (77), Expect = 0.028
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDER-GKTLGEGVVEFARKPSALSAI 243
++VRV NL L F FG + R YV +D++ G + G G V F + A AI
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 34.7 bits (76), Expect = 0.037
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+ V NL V+NE + F G++ER + D+ G+ G V + R+ A A++
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.7 bits (76), Expect = 0.037
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
V VKNL ++ L R F FG+I A V D GK+ G V F + +A++AI
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSA 240
V VKNL + N+ L F FGK+ V D G + G G V+F S +A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
V VKNL +S+E L + F FG + D GK+ G G V F A A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281
Score = 33.1 bits (72), Expect = 0.11
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 AKRELDGKLRNSRTLR-VRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDE 177
++RE + K + ++L+ S + VKNL V+++ L F FG I V D
Sbjct: 303 SERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP 362
Query: 178 RGKTLGEGVVEFARKPSALSAI 243
G + G G V F+ A AI
Sbjct: 363 SGVSRGSGFVAFSTPEEATRAI 384
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
V NLPP S + + F+ F ++ R + VD+ GK +G G EFA A A+
Sbjct: 301 VTNLPPRTSIQRMLYFFQDF-EVVRVRLIVDQSGKHMGCGYFEFASANEAEKAL 353
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALSAIRNCTK 258
V+ L ++E L +FE++G+I V +D + G+ G G V F + A +A++N K
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEK 226
Query: 259 NV 264
+
Sbjct: 227 RM 228
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.9 bits (69), Expect = 0.26
Identities = 26/90 (28%), Positives = 42/90 (46%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCT 255
+ VKN+ + L + F FG+I+ + G+ G VEF K AL N
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEAL----NAK 726
Query: 256 KNVSS*HHPYAQSLLKALKNLMNSMDILKR 345
K ++S H Y + L+ N NSM+ +++
Sbjct: 727 KALASTHF-YGRHLVLEWANDDNSMEAIRK 755
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGK 186
V+NLP + E L F FGKI ++ +D+ K
Sbjct: 265 VRNLPYTATEEELMEHFSTFGKISEVHLVLDKETK 299
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.5 bits (68), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
+ + V NL V+ E L ++F G++ YVK+ T G G V+F +PSA A++
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEV--IYVKIPA---TKGYGYVQFKTRPSAEEAVQ 290
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.1 bits (67), Expect = 0.45
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +1
Query: 4 KRELDGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERG 183
+ E + L ++ L F + V NL P + + F+ ++ R + V+ RG
Sbjct: 467 ENETEEGLDDTPALVEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRG 526
Query: 184 KTLGEGVVEFARKPSALSAIR 246
+ +G G VEFA A A++
Sbjct: 527 EHVGCGFVEFASVNEAQKALQ 547
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIR 246
V NLP + F+ G++ R + V+ +GK +G G VEFA A A++
Sbjct: 131 VANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQ 185
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 82 VKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSA 231
VKNL V++E L F FG I V D G + G G V F+ A
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAI 243
V VKNL +++ L +F +G I A V D GK+ G V F A A+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 VSNELLYRSFEIFGKIERAYVKVDE-RGKTLGEGVVEFARKPSALSA 240
V + L +F FG++ + D+ G++ G G V+FA + ALSA
Sbjct: 52 VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 712
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 348 LPKKHPEFTKARELGPRFSELNSFEHEYGTRWKQLHEL 461
L +K+ +FTK R L R S + E + RW + E+
Sbjct: 518 LSEKYADFTKQRNLSARASSMLEAERDSSKRWSPILEM 555
>At1g04440.1 68414.m00435 casein kinase, putative similar to casein
kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
contains protein kinase domain, Pfam:PF00069
Length = 468
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 28 RNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEI 138
R+S TLR +F P +S+V K P + ++ +S E+
Sbjct: 423 RSSTTLRTQFAPSSSSVATKAAPTRAARDITLQSLEL 459
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 106 SNELLYRSFEIFGKIERAYVKVDERGKTLGE 198
SNE LY++F+ F K Y+ +DE L E
Sbjct: 465 SNENLYKAFQHFDKDSSGYITIDELESALKE 495
>At2g25440.1 68415.m03047 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to NL0E
[Lycopersicon esculentum] gi|4235643|gb|AAD13303
Length = 671
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 205 VEFARKPSALSAIRNCTKNVSS*HHPYAQSLLKALKNLMNSMDILKRIFPRNIQNLRKLV 384
+E AR ++ SAI + ++N+ + P + LLKAL L S + P+++ NL++L
Sbjct: 482 MEQARVLTSYSAI-DFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQ 540
Query: 385 SLD 393
SLD
Sbjct: 541 SLD 543
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEF 213
S + V L P ELL +F FGKI A V +D E G + G G V +
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTY 84
>At1g24100.1 68414.m03041 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 460
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 206 TTPSPRVFPLSSTFT*ALSIFPNISNERYNSSFETNGGRFFT 81
TTPS V P+S F P S + Y+ SF+ NG T
Sbjct: 53 TTPSLSVEPISDGFDFIPIGIPGFSVDTYSESFKLNGSETLT 94
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 91 LPPFVSNELLYRSFEIFGKIERAYVKVDE-RGKTLGEGVVEFARKPSALSAIR 246
LPP + ++ L F FG+I A V D G + G G V++A A +A++
Sbjct: 487 LPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 91 LPPFVSNELLYRSFEIFGKIERAYVKVDE-RGKTLGEGVVEFARKPSALSAIR 246
LPP + ++ L F FG+I A V D G + G G V++A A +A++
Sbjct: 487 LPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 16 DGKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTL 192
D +LR + R S + ++NLP L SFE FG ++ Y+ + G+
Sbjct: 29 DNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPR 88
Query: 193 GEGVVEFARKPSALSAIRNCTKNV 264
G G V++ A A++ V
Sbjct: 89 GFGFVKYRYAEDAAEAMKRMNHKV 112
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 GKLRNSRTLRVRFXPXNSAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVDE-RGKTLG 195
G L SR+ + V LPP +++E + FE++G + + D+ + G
Sbjct: 93 GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRG 152
Query: 196 EGVVEFARKPSALSAIRNCTKNVS 267
G V F + + S + ++S
Sbjct: 153 FGFVSFDSEDAVDSVLHKTFHDLS 176
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 130 FEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSA 240
F G++ + VD RGK +G G VEFA A A
Sbjct: 15 FRDVGEVVSVRLIVDHRGKHVGCGFVEFASAYKAKKA 51
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 130 FEIFGKIERAYVKVDERGKTLGEGVVEFARKPSA 231
F+ G++ + VD++GK G G VEF A
Sbjct: 831 FKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADEA 864
>At1g73240.1 68414.m08476 expressed protein
Length = 519
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 473 FLTMKFMQLLPSSSIFMFETI*L*ETWSKLTSFRKFWMF-LGKILFRISIEFI 318
F Q +PSS+IF F I L T S ++ F +F ++LF +S+ +
Sbjct: 15 FAAFLIWQSIPSSAIFFFFNIFLFSTTSIISFLFTFLVFHSSQLLFSVSLALL 67
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 SAVRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVVEFARKPSALSA 240
+++ V+NL E L +SFE FG ++ Y+ D G G G V+F A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 103 VSNELLYRSFEIFGKIERAYVKVDERGKTLGEGVVEFARKPSALSAIRNCTKNVS 267
VS ++ Y+S E GK+ ++ K ++R K G VE + +NV+
Sbjct: 647 VSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVT 701
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 76 VRVKNLPPFVSNELLYRSFEIFGKIERAYVKVD-ERGKTLGEGVV 207
V V NLP V N L + F GK+ A V D E G++ G G V
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
>At3g05650.1 68416.m00629 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-4A protein
[Lycopersicon esculentum] gi|3097197|emb|CAA73187
Length = 868
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 280 PYAQSLLKALKNLMNSMDILKRIFPRNIQNLRKLVSLDHVSQS*IVSNMNMEL 438
P + LLK L L S + P ++ NLR+L SLD VSQ+ + + EL
Sbjct: 693 PRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLD-VSQNKLSGEIPQEL 744
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,538,920
Number of Sequences: 28952
Number of extensions: 175606
Number of successful extensions: 579
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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