Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0801X.Seq
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   3.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.3  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   9.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 328


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 362 SPSSSKSGAP 333
           SPSS+KSG+P
Sbjct: 74  SPSSTKSGSP 83


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 446 QRDGYTCQRPGARSSRFLPFLSRHVRRLSPSSSKSG 339
           ++D  T   P A  +R       H+RRL  S  KSG
Sbjct: 123 EKDMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSG 158


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 328 GFRFSALRHLDPKKLD*GDGSRSGPRPDRRF 236
           GFR  A +H+ P  L+   GS      D  F
Sbjct: 200 GFRVDAAKHMWPADLEAIYGSLKNLNTDHGF 230


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 328 GFRFSALRHLDPKKLD*GDGSRSGPRPDRRF 236
           GFR  A +H+ P  L+   GS      D  F
Sbjct: 200 GFRVDAAKHMWPADLEAIYGSLKNLNTDHGF 230


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 223 RWSPRSLIVDSCSKLEQHSTLSRSILLIYKGF 128
           R +P +++   C+KL   S    +   + KGF
Sbjct: 33  RGTPLAMLAAQCNKLSNKSPPPLADAAVGKGF 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,495
Number of Sequences: 336
Number of extensions: 1843
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)