Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0801X.Seq
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_27823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17) 29 2.4
SB_5222| Best HMM Match : Ras (HMM E-Value=2.9e-09) 29 2.4
SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18) 28 4.3
SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10) 27 7.5
SB_8222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_20917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_9761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 27 9.9
SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1) 27 9.9
SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_9250| Best HMM Match : BAG (HMM E-Value=6.2) 27 9.9
>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 925
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 63 QNINAYNLPFAIQLRNCWEGR 1
++++ + P+ +LRNCWEGR
Sbjct: 518 ESVSRNSTPYTQRLRNCWEGR 538
>SB_27823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 458 GDYAQRDGYTCQR 420
G YAQRD YTCQR
Sbjct: 94 GGYAQRDRYTCQR 106
>SB_10099| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.6e-17)
Length = 629
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 45 NLPFAIQLRNCWEGR 1
+L ++I+LRNCWEGR
Sbjct: 457 SLFYSIRLRNCWEGR 471
>SB_5222| Best HMM Match : Ras (HMM E-Value=2.9e-09)
Length = 181
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 458 GDYAQRDGYTCQR 420
G YAQRD YTCQR
Sbjct: 169 GGYAQRDRYTCQR 181
>SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 60 NINAYNLPFAIQLRNCWEGR 1
N+ A + PF +LRNCWEGR
Sbjct: 440 NMGASHSPF--RLRNCWEGR 457
>SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)
Length = 539
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 449 AQRDGYTCQRPGARSSRFLPFLSRHVRRLSPSSSKS 342
+Q+ C+R A S F FL + + LSPS +K+
Sbjct: 131 SQKSRARCKRKAAPESPFKSFLKNNDKSLSPSKAKN 166
>SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10)
Length = 606
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 63 QNINAYNLPFAIQLRNCWEGR 1
+ NA N P LRNCWEGR
Sbjct: 375 ERFNAENAPN--MLRNCWEGR 393
>SB_8222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 39 PFAIQLRNCWEGR 1
P A +LRNCWEGR
Sbjct: 52 PQAPRLRNCWEGR 64
>SB_20917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 204 KERGLQRQRAKNRLSGRGPLREP 272
K RGL R+ RL GR L+EP
Sbjct: 40 KHRGLNSSRSTERLFGRHKLKEP 62
>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 27 QLRNCWEGR 1
QLRNCWEGR
Sbjct: 888 QLRNCWEGR 896
>SB_9761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2
Query: 458 GDYAQRDGYTCQ 423
G YAQRD YTCQ
Sbjct: 22 GGYAQRDRYTCQ 33
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 30 IQLRNCWEGR 1
I+LRNCWEGR
Sbjct: 239 IRLRNCWEGR 248
>SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1)
Length = 283
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Frame = -1
Query: 42 LPFA--IQLRNCWEGR 1
+PF ++LRNCWEGR
Sbjct: 92 IPFVALLKLRNCWEGR 107
>SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 27 QLRNCWEGR 1
QLRNCWEGR
Sbjct: 164 QLRNCWEGR 172
>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 204 KERGLQRQRAKNRLSGRGPLREPSP*SSFLGSRCRKALNRNPKGSPR 344
+E + +R+K+R R P R+PSP + A P GSPR
Sbjct: 278 EEEPSRSRRSKDR--SRSPQRKPSPVARATVGETTSAKPTTPPGSPR 322
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 27 QLRNCWEGR 1
QLRNCWEGR
Sbjct: 22 QLRNCWEGR 30
>SB_9250| Best HMM Match : BAG (HMM E-Value=6.2)
Length = 232
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 57 INAYNLPFAIQLRNCWEGR 1
+ A + PF +LRNCWEGR
Sbjct: 175 VGASHSPF--RLRNCWEGR 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,895
Number of Sequences: 59808
Number of extensions: 264128
Number of successful extensions: 932
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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