Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0801X.Seq
         (459 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   3.9  
AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical prote...    23   5.1  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   5.1  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   6.8  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 235 KTVYQGEAHYVNHHPNQVFWGR 300
           ++   G  +YVNH+     W R
Sbjct: 170 RSAQNGRTYYVNHYTKTTQWSR 191


>AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical protein
           protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 437 GYTCQRPGARSSRFLPFLSRHVRRLSPSSSKSGAP 333
           GY   R G  S  F P++ +  + ++ S+++   P
Sbjct: 69  GYVSPRGGTNSDDFSPYIKQDKKDITFSTTQDNFP 103


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 458 GDYAQRDGYTCQRPG 414
           G Y + D ++C RPG
Sbjct: 585 GRYCECDNFSCDRPG 599


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 182 TGTTLNPISVYSFDL*GILPISAYWLKNELI*QKFNANFNKIL 54
           T + LN +++ S D   I  I    L+N    Q+ + N NK+L
Sbjct: 400 TFSGLNSLALLSLDYNRISRIDRQALRNHSALQELHLNGNKLL 442


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,602
Number of Sequences: 2352
Number of extensions: 8413
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39544623
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)