Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0800.Seq
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 155 6e-39
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 152 6e-38
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 139 3e-34
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 139 3e-34
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 134 2e-32
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 68 1e-12
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 65 8e-12
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 49 8e-07
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 29 0.67
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 28 1.2
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.2
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 1.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 26 6.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.3
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 155 bits (376), Expect = 6e-39
Identities = 73/84 (86%), Positives = 78/84 (92%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIF LGGGTFDVS
Sbjct: 147 YFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVS 206
Query: 436 ILTIEDGIFEVKSTAGDTHLGGED 507
+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 207 LLTIEEGIFEVKATAGDTHLGGED 230
Score = 134 bits (324), Expect = 1e-32
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +2
Query: 2 NNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 181
+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSMV
Sbjct: 62 HNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMV 121
Query: 182 LTKMKETAEAYLGKTVQNAVITVP 253
L KM+ETAEAYLG V +AV+TVP
Sbjct: 122 LMKMRETAEAYLGGKVTDAVVTVP 145
Score = 129 bits (311), Expect = 5e-31
Identities = 61/71 (85%), Positives = 66/71 (92%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
D+R+VNHF+QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIEIDSLFEGIDF
Sbjct: 232 DSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDF 291
Query: 690 YTSITRARFEE 722
YTSITRARFEE
Sbjct: 292 YTSITRARFEE 302
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 152 bits (368), Expect = 6e-38
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIF LGGGTFDVS
Sbjct: 147 YFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVS 206
Query: 436 ILTIEDGIFEVKSTAGDTHLGGED 507
+LTIE+GIFEVK+TAGDTHLGGED
Sbjct: 207 LLTIEEGIFEVKATAGDTHLGGED 230
Score = 126 bits (305), Expect = 2e-30
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +2
Query: 2 NNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 181
+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSMV
Sbjct: 62 HNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMV 121
Query: 182 LTKMKETAEAYLGKTVQNAVITVP 253
L KM+E+AEA+LG V +AV+TVP
Sbjct: 122 LLKMRESAEAFLGGKVTDAVVTVP 145
Score = 126 bits (305), Expect = 2e-30
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
D+R+VNHF QEFKRK KKD+ N RA+RRLRTACERAKRTLSSS QASIEIDSL+EGIDF
Sbjct: 232 DSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDF 291
Query: 690 YTSITRARFEE 722
YTSITRARFEE
Sbjct: 292 YTSITRARFEE 302
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 139 bits (337), Expect = 3e-34
Identities = 62/84 (73%), Positives = 79/84 (94%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++ LGGGTFDVS
Sbjct: 180 YFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVS 238
Query: 436 ILTIEDGIFEVKSTAGDTHLGGED 507
+L+I++G+FEV +T+GDTHLGGED
Sbjct: 239 LLSIDNGVFEVLATSGDTHLGGED 262
Score = 108 bits (259), Expect = 9e-25
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +2
Query: 5 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 184
NTIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+L
Sbjct: 96 NTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMIL 155
Query: 185 TKMKETAEAYLGKTVQNAVITVP 253
+KMK+TAEAYLGK V +AV+TVP
Sbjct: 156 SKMKQTAEAYLGKPVTHAVVTVP 178
Score = 67.7 bits (158), Expect = 2e-12
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
DNR++N+ + + RK D+ + +A+ +L+ E+AKRTLSS IEI+S F G DF
Sbjct: 264 DNRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDF 323
Query: 690 YTSITRARFEE 722
+++RA+FEE
Sbjct: 324 SETLSRAKFEE 334
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 139 bits (337), Expect = 3e-34
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIF LGGGTFDVS
Sbjct: 151 YFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVS 210
Query: 436 ILTIEDGIFEVKSTAGDTHLGGED 507
+L I+ G+FEV +TAGDTHLGGED
Sbjct: 211 LLKIQGGVFEVLATAGDTHLGGED 234
Score = 112 bits (270), Expect = 4e-26
Identities = 51/83 (61%), Positives = 64/83 (77%)
Frame = +2
Query: 5 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 184
NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+MVL
Sbjct: 67 NTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVL 126
Query: 185 TKMKETAEAYLGKTVQNAVITVP 253
TKMKE +EA L K V+ AVITVP
Sbjct: 127 TKMKEISEAKLNKRVEKAVITVP 149
Score = 104 bits (249), Expect = 1e-23
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
DN +V HF+QEFKRK K D++ + RALRRLR+ACERAKR LSS TQ ++E+DSL GIDF
Sbjct: 236 DNALVEHFIQEFKRKQKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDF 295
Query: 690 YTSITRARFEE 722
+SITRARFE+
Sbjct: 296 SSSITRARFED 306
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 134 bits (323), Expect = 2e-32
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +F LGGGTFD+S
Sbjct: 193 YFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDIS 250
Query: 436 ILTIEDGIFEVKSTAGDTHLGGEDLTIA 519
IL + +G+FEV+ST GDTHLGGED +A
Sbjct: 251 ILELNNGVFEVRSTNGDTHLGGEDFDVA 278
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/83 (43%), Positives = 52/83 (62%)
Frame = +2
Query: 5 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 184
NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++ +L
Sbjct: 112 NTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGFIL 168
Query: 185 TKMKETAEAYLGKTVQNAVITVP 253
+KM+ETA YLGK V+NAV+TVP
Sbjct: 169 SKMRETASTYLGKDVKNAVVTVP 191
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 662
D +V H V+ FK+ DL+ ++ A++R+R A E+AK LSS ++ I +
Sbjct: 276 DVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISL 326
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +3
Query: 519 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTS 698
+VN F +EF++K D N R+L +LR CE KR LS+ T AS +DSL +GIDF++S
Sbjct: 261 LVNFFAKEFEKKNGIDPRKNARSLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFHSS 320
Query: 699 ITRARFE 719
I R R++
Sbjct: 321 INRLRYD 327
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/86 (31%), Positives = 53/86 (61%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVS 435
YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++ G +VS
Sbjct: 173 YFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVS 232
Query: 436 ILTIEDGIFEVKSTAGDTHLGGEDLT 513
+++++ G+ + ++ D +LGGE LT
Sbjct: 233 VVSVKGGLMTILASVHDENLGGEQLT 258
Score = 29.5 bits (63), Expect = 0.51
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 NNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPE 163
+N++ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAH 141
Query: 164 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 253
E S L ++ E+AE +LG V V++VP
Sbjct: 142 EASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 65.3 bits (152), Expect = 8e-12
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 256 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFXLGGGT 423
+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I G
Sbjct: 151 WFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSN 210
Query: 424 FDVSILTIEDGIFEVKSTAGDTHLGGEDL 510
+ VSI+ G F +KST D +LG ++
Sbjct: 211 YSVSIVEFSRGQFHIKSTVCDRNLGSRNM 239
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
D ++++F EFK KYK D+ +N +A RL TA ER K+ LS++ A + ++ + ID
Sbjct: 240 DKALIDYFAAEFKEKYKIDVLSNPKATFRLATAVERLKKVLSANANAPLNVEMIMNDIDA 299
Query: 690 YTSITRARFEE 722
+ I R+ FEE
Sbjct: 300 SSFIKRSDFEE 310
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 NTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 181
NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 182 LTKMKETAEAYLGKTVQNAVITVP 253
TK+K AEA L +V + VI++P
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIP 149
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 48.8 bits (111), Expect = 8e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +3
Query: 510 DNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDF 689
+ +++ F +K+ DL+ N RAL RL R K LS++++A I+ L +GIDF
Sbjct: 268 NRKLIGFMKNSFYQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASIEELADGIDF 327
Query: 690 YTSITRARFE 719
ITR+ E
Sbjct: 328 RLKITRSVLE 337
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 29.1 bits (62), Expect = 0.67
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 422 PSTCPSLPSRMVSSR*NPP---PATPTWEVRT*QSHGEPLCPGVQEEIQKGPRYQQESS 589
PS S+ R + PP P+ P+ T QS G+PL PG + GP + SS
Sbjct: 566 PSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGAMANVSAGPSSVRSSS 624
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 553 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALR 660
N K+ LP E + + + V G GP H+PH R LR
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLR 45
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 416 AVPSTCPSLPSRMVSSR*NPPPATPTWEVRT*QSHGEPLCPG 541
++PST P++PS +S + PP T ++ QSH L G
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSG 340
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 509 KSSPPKWVSPAVDFTSKIPSSMVRMDTSKVP 417
KSSP K VSP V SK +S V + S +P
Sbjct: 204 KSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.7
Identities = 28/126 (22%), Positives = 52/126 (41%)
Frame = -2
Query: 420 TAAEVKDKYISFSSTLFVKTVSNRSSSGFIDDSENVQA*DGTCIFCGLSLRVIEVPGTVI 241
+++ + + S SS L T S S+S I S + F S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 240 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 61
++ T+L + S + +S+ + S +LSS + + + SL+T S+
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSSVIPSSS 675
Query: 60 TVASSN 43
T+ SS+
Sbjct: 676 TLVSSS 681
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 541 SWTKWFTMRLSSPHLPS 491
++TKWF +LSS LPS
Sbjct: 13 TFTKWFNTKLSSRDLPS 29
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -3
Query: 506 SSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRXKISTFRSPVPFLS 366
S PP P + IP PPPR ST R P P S
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 519 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 656
+++ F EFK++ K D + L+ L + C R R SS SI
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI 756
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,902
Number of Sequences: 5004
Number of extensions: 65852
Number of successful extensions: 247
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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