Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0799.Seq
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.12
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.0
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 27 3.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 4.6
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 8.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.1
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 8.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 8.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 580 TTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
TTS+ T SS A +T AT SSTP + S+ A A+ TP
Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTP 358
Score = 29.9 bits (64), Expect = 0.38
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 577 LTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
L TSS + P SS A +T AT SSTP + S+ A A+ TP
Sbjct: 415 LPTSSVSSTPLSS--ANSTTATSASSTPLSSVNSTTATSASSTP 456
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 577 LTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
L TSS + P SS A +T AT SSTP + S+ A A+ TP
Sbjct: 529 LPTSSVSSTPLSS--ANSTTATSASSTPLTSVNSTTATSASSTP 570
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 556 VFQPPLFLTTSSQVTIPSSSMVAI--TTIATVDSSTPRDLLKSSPAAPATKTP 708
V PL S+ T SS+ ++ +T AT SSTP + S+ A A+ TP
Sbjct: 420 VSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTP 472
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 568 PLFLTTSSQVTIPSSSMVAI--TTIATVDSSTPRDLLKSSPAAPATKTP 708
PL S+ T SS+ ++ +T AT SSTP + S+ A A+ TP
Sbjct: 440 PLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 488
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 568 PLFLTTSSQVTIPSSSMVAI--TTIATVDSSTPRDLLKSSPAAPATKTP 708
PL S+ T SS+ + +T AT SSTP + S+ A A+ TP
Sbjct: 342 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTP 390
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 568 PLFLTTSSQVTIPSSSMVAI--TTIATVDSSTPRDLLKSSPAAPATKTP 708
PL S+ T SS+ + +T AT SSTP + S+ A A+ TP
Sbjct: 456 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTP 504
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 580 TTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
T +S + P SS+ + T AT SSTP + S+ A A+ TP
Sbjct: 334 TATSTSSTPLSSVNSTT--ATSASSTPLTSVNSTTATSASSTP 374
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 577 LTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
L +S+ + P SS A +T AT SSTP + S+ A+ TP
Sbjct: 282 LPSSTPSSTPLSS--ANSTTATSASSTPLTSVNSTTTTSASSTP 323
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 526 KPIIPPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKS 678
KP+IP + + F+P L + +PSS V ++ +ST + + S
Sbjct: 229 KPLIPAHPVPSFRPTSALKVNMNSNVPSSDSVRNSSPNQYYASTSKQSIPS 279
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 565 PPLFLTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPA 696
PP L + + + PS SMV IA D D K SP PA
Sbjct: 209 PPPSLLSHATLARPSESMVLSNNIAAED----LDFFKKSPPVPA 248
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 585 VFPGNDTQQQHGCHNNDCHGGFINPQRLTEIQPSSASNKDT 707
+ P ND+Q Q+ H + ++N T P S S+ +T
Sbjct: 117 ISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDSGSSLNT 157
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 496 EEFNFDNKELKPIIPPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSST 657
+E NF + + I + I++F PP + T + ++ +++ A + S+T
Sbjct: 251 DELNFTKEMILRDIQYHNIRIFFPPTYETDDPESVAENADIMSRIPFAIIASNT 304
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 340 GERLRRTVNVNRAGTVVLQL-LWRHGYSLCGAAGPVIFGVGYNDIKSW 200
G++ VN++G + +W + G P+ FG GY D K+W
Sbjct: 211 GKKTSAQYYVNKSGRSAEDVCVWGNEGDDYGNWAPMNFGSGYTDGKTW 258
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 538 PPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSST 657
P + P +TT + T ++ MV TTI TV++ T
Sbjct: 144 PMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMT 183
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 649 SSTPRDLLKSSPAAPATK 702
S P+DLLK+ PA P++K
Sbjct: 195 SCLPKDLLKAPPADPSSK 212
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 247 AGPVIFGVGYNDIKSWWLVGAVL 179
A ++ G GY + WW +G +L
Sbjct: 396 APELLLGHGYTKVVDWWTLGVLL 418
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 577 LTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSP 684
L+T S IPSSS + ++ + + SS+P SSP
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSP 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,869
Number of Sequences: 5004
Number of extensions: 59519
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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