Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0799.Seq
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493... 50 1e-06
08_02_1033 - 23813410-23813525,23813895-23814343,23815677-238159... 48 1e-05
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303... 46 2e-05
01_06_1584 - 38441654-38442847 30 1.6
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 29 3.6
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 29 4.8
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 28 6.4
08_01_0628 - 5460030-5462960 28 6.4
06_02_0009 + 10561257-10561751 28 6.4
04_01_0089 + 958853-959374 28 6.4
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 28 6.4
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 28 8.4
03_02_0906 - 12295278-12295571 28 8.4
01_05_0398 - 21756818-21757534 28 8.4
>12_02_0527 +
20047027-20047281,20048169-20048390,20048996-20049354,
20049706-20049766,20049911-20050018
Length = 334
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = -1
Query: 441 VAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVT 262
++F V++ L YFFASG+A+I AM F +++ G P ++ A+ L F ++ G +T
Sbjct: 170 LSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVSSALGTPPLIAAMVLSFLSNIMGGLT 229
Query: 261 HY 256
HY
Sbjct: 230 HY 231
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 674 FSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWY 543
F L VD + AI+ ++ +L+ G+VTW++ + W+TL W+
Sbjct: 91 FGGMLNVDAVSAAILGLSVLLISGVVTWKECLGEAVAWDTLTWF 134
Score = 31.9 bits (69), Expect = 0.52
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 247 AGPVIFGVGYNDIKSWWLVGAVLTILTFLV 158
+ PV +G GY + WW G V++I+ ++
Sbjct: 235 SAPVFYGAGYVPLAQWWGYGFVISIVNIII 264
>08_02_1033 -
23813410-23813525,23813895-23814343,23815677-23815990,
23817021-23817809
Length = 555
Score = 47.6 bits (108), Expect = 1e-05
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -2
Query: 674 FSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWY 543
F ++GV A++ ++ +LLLG++ WED + K W+TL W+
Sbjct: 367 FGDTIGVSSVVAAMIGLSILLLLGVLNWEDCLNEKSAWDTLAWF 410
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = -1
Query: 438 AFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTH 259
AF V+ + Y FAS +A++ A+ F + +G P +L+ALAL ++++ G +TH
Sbjct: 447 AFGVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTH 506
Query: 258 YAARQ 244
Y++ Q
Sbjct: 507 YSSGQ 511
>09_04_0465 +
17827224-17827997,17828711-17829024,17829949-17830397,
17830641-17830756
Length = 550
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -1
Query: 438 AFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTH 259
AF V+ ++ Y FAS + ++ A+ F + +G P +L+ALAL F+ + G +TH
Sbjct: 442 AFCVLEASYFLIHYLFASQTGHVGALYSAFLAMHVAAGVPRVLSALALAFNTNLFGALTH 501
Query: 258 YAARQ 244
Y++ Q
Sbjct: 502 YSSGQ 506
Score = 45.2 bits (102), Expect = 5e-05
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -2
Query: 674 FSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWY 543
F ++GV A++ ++ +LLLG++ W+D + K W+TL W+
Sbjct: 362 FGDAIGVSSVVAAMLGLSILLLLGVLDWDDCLNEKSAWDTLAWF 405
>01_06_1584 - 38441654-38442847
Length = 397
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -1
Query: 531 RLKLLIIEVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPV 352
R+ LL++ V FF + + G+VAF VIIFLS ++ + ++ PV
Sbjct: 232 RVSLLMLSVLFFLPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVYYPV 291
Query: 351 FAMLA 337
LA
Sbjct: 292 ADSLA 296
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 573 IFNHVFPGNDTQQQHGCHNNDCHGGFINPQRLTEIQPSSASNKDT 707
IF +F GND + + GC N ++P L + P + K++
Sbjct: 1240 IFPEMFNGNDYKDRPGCSNICLDDDILDPSLLANLAPELSELKNS 1284
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 676 ISVSLWGLMNPPWQSLLWQPCC 611
+S+++WG +PPW LL Q C
Sbjct: 31 LSIAVWGNPHPPWHLLLRQHRC 52
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +1
Query: 532 IIPPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSST 657
++P + IK+ QP +F T +++ + +++++ I+T + T
Sbjct: 176 VVPTFDIKLLQPTIFSTYNARKDVSKNALLSDVCISTSAAPT 217
>08_01_0628 - 5460030-5462960
Length = 976
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 345 MLANVSGAPLMLTALALLFSNSYGGMVTHYAARQVRSSLAWV 220
ML G PL + A+ L + T +A R VR SLAWV
Sbjct: 399 MLERCRGLPLAIVAVGKLLRHKDR---TEFAWRNVRDSLAWV 437
>06_02_0009 + 10561257-10561751
Length = 164
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 162 WCIXXLGVWWWNMLIGW 112
WC +G WWW L GW
Sbjct: 9 WCRAAVGPWWW--LAGW 23
>04_01_0089 + 958853-959374
Length = 173
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 228 PKMTGPAAPHSE*-PCRHRSWRTTVPARLTLTVRRRRS 338
PK+T + E PCR R R T RL RRRR+
Sbjct: 70 PKLTAASGEEEEVTPCRRREDRATTGGRLGERERRRRA 107
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 594 GNDTQQQH--GCHNNDCHGGFINPQRLTEIQPSSASNKDTE 710
G D + H GC N+ CHGG + ++ E +P N DTE
Sbjct: 83 GYDKFKSHCCGCPNHSCHGGERSNIKIEEERPE--VNPDTE 121
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 680 LDFSKSLGVDESTVAIVVMATMLLLGIVTW 591
+++ KSLGV ES + +V AT LLG+ T+
Sbjct: 378 VEYLKSLGVTESGLGNLVKATYDLLGLRTY 407
>03_02_0906 - 12295278-12295571
Length = 97
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = -2
Query: 314 C*PRWHCCSPTPMAA--WLLTMRRGRSGHLWRGL 219
C PR C P P A W + +RR R W L
Sbjct: 33 CLPRRATCQPAPPAGAHWAIPLRRDRQTRPWSSL 66
>01_05_0398 - 21756818-21757534
Length = 238
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = +3
Query: 153 ICTRKVNIVSTAPTNHQDLISL*PTPKMTGPAAPHSE*PCRHRSWRTTVPARLTLTVRRR 332
+CT + V+ P H+ + S+ GP A CR R + V T
Sbjct: 69 VCTEPLEWVAVGPCGHRAVCSMCVARVRAGPDADKRSCICRTRCYTVAVTKAATAADTLH 128
Query: 333 RSPAWQIPVT*QRYR 377
P +PVT + +R
Sbjct: 129 AFPK-TVPVTSRDWR 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,054,264
Number of Sequences: 37544
Number of extensions: 433106
Number of successful extensions: 1367
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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