Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0799.Seq
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_547| Best HMM Match : zf-MYM (HMM E-Value=4.3)                      29   3.7  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   28   6.5  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   6.5  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               28   8.6  
SB_38303| Best HMM Match : Fz (HMM E-Value=9.8e-07)                    28   8.6  

>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = -3

Query: 325 RTVNVNRAGTVVLQLLWRHGYSLCGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHXXP 146
           ++V +  A +VV  L    G       GPV+F +  ND+ S W   A       ++   P
Sbjct: 377 QSVRIGSASSVVRYL--NGGIPQGTKLGPVLFSIMVNDLVSKWATRAKYVDDLTVLEIIP 434

Query: 145 RRVVVEYADRLE 110
           R     Y +R+E
Sbjct: 435 RNSPSYYTERME 446


>SB_547| Best HMM Match : zf-MYM (HMM E-Value=4.3)
          Length = 87

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 90  SYFKLHVLRLRSLTPVTYLCKLLGI 16
           +Y K+H+ RLR   P+  LCK+ G+
Sbjct: 26  TYCKVHLQRLRMGIPLAVLCKICGV 50


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 583 TSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAPATKTP 708
           +++  + PS+S  + +T     +STPR    ++ +AP+T TP
Sbjct: 46  STTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTP 87


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 94  EYLQHVPADQHIPPPHAEAXYAPGRLISSVPHRPTTRI*YRYNPRQR 234
           E LQ  P++ + PPP      +P      +P  PT+ I Y Y P  R
Sbjct: 267 ESLQAAPSNPYKPPP-IPLRASPSYSYKPLPRIPTSLIPYPYKPLPR 312


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 TTSSQVTI-PSSSMVAITTIATVDSSTPRDLLKSSPAAPAT 699
           T + + TI P ++M   TTIA   ++ P  ++  + AAPAT
Sbjct: 397 TMAPETTIAPETTMAPETTIAPETTAVPGTMVPETTAAPAT 437


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 106 HVPADQHIPPPHAEAXYAPGRLISSVPHRPTT 201
           H P       PH      P R IS  PHRPTT
Sbjct: 74  HDPIAPRPRSPHGPVAPRPHRPISPRPHRPTT 105


>SB_38303| Best HMM Match : Fz (HMM E-Value=9.8e-07)
          Length = 528

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 505 NFDNKELKPIIPPYQIKVFQPPLFLTTSSQVTIP---SSSMVAITTIATVDSSTPRDLLK 675
           N D+  ++ ++P  ++K   PP    T+ Q TIP   ++S++   TI  +   +    L 
Sbjct: 454 NDDDDVVRDVVPTVRVKHTAPP----TAVQTTIPIGNNASVINKPTIVNITGDSKETNLA 509

Query: 676 SSPAAPATKTPS 711
            + +   TK P+
Sbjct: 510 ETESPSPTKQPT 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,482,673
Number of Sequences: 59808
Number of extensions: 468473
Number of successful extensions: 1417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)