Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0799.Seq
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43283-5|AAC69019.1| 80|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 29 3.3
U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe chro... 29 4.3
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 7.6
AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical ... 28 7.6
AC006830-2|AAK68611.2| 293|Caenorhabditis elegans Serpentine re... 28 7.6
>U43283-5|AAC69019.1| 80|Caenorhabditis elegans Hypothetical
protein T25G12.3 protein.
Length = 80
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 562 QPPLFLTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAAP 693
+P + ++T++ T ++ +A TTI T+ SST R ++ + P
Sbjct: 21 KPSIVVSTTTTTTAQPTTAIATTTINTIISSTVRPIVVTKKPLP 64
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 511 DNKELKPIIPPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAA 690
D E+ I+PP PP + T PS++ +T T ++T + ++ +A
Sbjct: 290 DPTEMDLIVPPPMNGKALPPRVIVTIP----PSTTSTTTSTTTTTTTTTTEEPTTTTTSA 345
Query: 691 PATKTP 708
P T TP
Sbjct: 346 PTTTTP 351
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 511 DNKELKPIIPPYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVDSSTPRDLLKSSPAA 690
D E+ I+PP PP + T PS++ +T T ++T + ++ +A
Sbjct: 365 DPTEMDLIVPPPMNGKALPPRVIVTIP----PSTTSTTTSTTTTTTTTTTEEPTTTTTSA 420
Query: 691 PATKTP 708
P T TP
Sbjct: 421 PTTTTP 426
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 379 CLYRCYVTGICHAGERLRRTVNVNRAGTVVLQLLWRHGYSLCGAA 245
C Y + T C+A ER R T V G ++ L+ +G C A
Sbjct: 92 CAYSFFKTNKCYAFERFRPTDFVKNGGMPLIFKLYLNGTVTCDTA 136
>U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe
chromosome segregationprotein) homolog protein 1
protein.
Length = 307
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +3
Query: 168 VNIVSTAPTNHQDLISL*PTPKMTGPAAPHSE*PCRHRSWRTTVPA--------RLTLTV 323
V ST PTN + + + P+ GP+ P + P R + + PA L+ TV
Sbjct: 209 VEEASTIPTNRRAPMLIAPSSTPAGPSKPTARKPPTPRFKKPSTPALAPQSDDTELSSTV 268
Query: 324 RRRRSPAWQI 353
RR+RS I
Sbjct: 269 RRQRSAKMNI 278
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 136 VVEYADRLEHAVNILVILQVACAASAFAHPSHLLM 32
++E +EH + + +ILQ +C A H SHLL+
Sbjct: 244 LIELLFFVEHGIPV-IILQDSCELCAILHSSHLLL 277
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 541 PYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVD--SSTPRDLLKSSPAAPATKT 705
P V P +S VT SSS +TT + + S++P + +S AP+T T
Sbjct: 444 PSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTST 500
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 541 PYQIKVFQPPLFLTTSSQVTIPSSSMVAITTIATVD--SSTPRDLLKSSPAAPATKT 705
P V P +S VT SSS +TT + + S++P + +S AP+T T
Sbjct: 444 PSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTST 500
>AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical
protein Y50D4C.5 protein.
Length = 540
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 601 IPSSSMVAITTIATVDSSTPRDLLKSSPAAPATK 702
+PS SM +T +T + TP L + PAA A +
Sbjct: 329 MPSRSMTDVTLASTASTPTPSTPLPTRPAAAAAQ 362
>AC006830-2|AAK68611.2| 293|Caenorhabditis elegans Serpentine
receptor, class sx protein40 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 435 FFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLF 289
FF +IFL II++ Y + ++ + L SG PL+L ++ + F
Sbjct: 27 FFNLIFLIIILKNKNLKSMFYRLILVSIVFQLFQFSGIPLILISIIVPF 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,331
Number of Sequences: 27780
Number of extensions: 344965
Number of successful extensions: 1209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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