Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0799.Seq
(711 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 24 1.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 5.0
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 5.0
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 24.2 bits (50), Expect = 1.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 159 CIXXLGVWWWNMLI 118
C + WWWNM I
Sbjct: 359 CQNEMNKWWWNMKI 372
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 292 PSWIKMLFLQWLPCLLRMSRPGK 314
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 288 RYVMPSWIKMLFLQWLPCLLR 308
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 360 PSWIKMLFLQWLPCLLRMSRPGK 382
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 356 RYVMPSWIKMLFLQWLPCLLR 376
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 646 PPWQSLL---WQPCCCWVSLPGK 587
P W +L W PC +S PGK
Sbjct: 360 PSWIKMLFLQWLPCLLRMSRPGK 382
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 430 RYYFPQHYRALFLRFR*CLYR 368
RY P + LFL++ CL R
Sbjct: 356 RYVMPSWIKMLFLQWLPCLLR 376
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 91 REYLQHVPADQHIPPP 138
R+ + HV D+ +PPP
Sbjct: 308 RDSVDHVDFDEFLPPP 323
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 435 FFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLF 289
FF++I I + F +G A +FA++ +++G +T A+ +
Sbjct: 95 FFMMIKTPIFIYNSFNTGFALGNLGCQIFAVIGSLTGIGAAITNAAIAY 143
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,591
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 23
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -