Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0797.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    30   1.7  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At1g14740.1 68414.m01762 expressed protein                             28   5.2  
At1g50830.1 68414.m05716 hypothetical protein                          28   6.8  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    27   9.0  
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    27   9.0  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   9.0  

>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 455 RNDRKSRHRRIKKQRRYEAWLPQASYPC 538
           R +RKS ++ +KK+   E+W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 637 ASFCLLLHARFLSSLSWP 690
           ASFC+L+HA   ++L WP
Sbjct: 105 ASFCILIHALVKANLFWP 122


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -3

Query: 336 YCSVREEPQFRTFGSCTRP-SGRWCEATTAGLCLNASKAEASLAESGKDMLTVEPRESGG 160
           + +VR       F S + P SG   E T + LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 159 SK--QCDFTSRVSHSKRETRRRS 97
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


>At1g50830.1 68414.m05716 hypothetical protein
          Length = 768

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 PPDSRGSTVSISLPDSARLASALEAFRHNPAVVASHHRPLGRVHEPNVRNC 313
           P  SR +  +   P + RLA   E     PA++A  +R L R+HE +  +C
Sbjct: 225 PVKSRRNISNHVFPIAVRLARG-ERIALAPAILAILYRDLDRIHEVSREDC 274


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 651 KAKAGLIQMFSTHRDCESTAYRSFSIK 571
           +AK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 511 SFIATLLFDPSMSALPIIAKQNSPSVGLFT 422
           S +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 7   SVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 227 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 87
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,070
Number of Sequences: 28952
Number of extensions: 314198
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)