Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q57W75 Cluster: Bis(5'-adenosyl)-triphosphatase, putati...    33   4.9  
UniRef50_Q7RKY1 Cluster: Axonemal heavy chain dynein type 3; n=8...    33   6.4  

>UniRef50_Q57W75 Cluster: Bis(5'-adenosyl)-triphosphatase, putative;
           n=1; Trypanosoma brucei|Rep:
           Bis(5'-adenosyl)-triphosphatase, putative - Trypanosoma
           brucei
          Length = 416

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 423 ICISKLPCLLLSP-LRGTGDAPSLSGAETSRGAARHSDGAPL 545
           + IS L  +L+ P + GTGD  S  G+   RG + HS G+P+
Sbjct: 286 LTISVLSHVLVKPAVTGTGDTSSNGGSRVERGCSPHSIGSPV 327


>UniRef50_Q7RKY1 Cluster: Axonemal heavy chain dynein type 3; n=8;
            cellular organisms|Rep: Axonemal heavy chain dynein type
            3 - Plasmodium yoelii yoelii
          Length = 3690

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 352  IIKHTSDLNVRSDI*TSFIPLNSHFHDLRAHLIHENFVYT*LENGVMMTYNKLFKVKFSY 173
            II +  DL++ S I +    L ++F  +  H++   F+    ++ + +  N LF   F+ 
Sbjct: 1083 IILNNCDLSIASYICSYINTLPNNFDPIHKHILLNLFMCLFHKSLLFICINNLFVYAFNE 1142

Query: 172  YYYC 161
            YYYC
Sbjct: 1143 YYYC 1146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,065,539
Number of Sequences: 1657284
Number of extensions: 10216975
Number of successful extensions: 22257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22248
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)