Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    27   2.5  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    26   5.8  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 349 IKHTSDLNVRSDI*TSFIPLNSHFHDLRAHLIHENFVYT*LENGVMMTYNKL 194
           + +T DL++ SD+  +F  L+   HDL+  +  ++     LE  V    +K+
Sbjct: 31  VLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSKI 82


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 80  WVLRRIQIQ*NKY*NKIQISLTIKFNITVIVIRKLYFK*FIIS 208
           W L  I    +KY   I  S+ +K N TVI+ R  + K ++++
Sbjct: 65  WHLLAILYDKSKYIKIIICSVLLKLNTTVIIRRNTHTKVYVMN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,716
Number of Sequences: 5004
Number of extensions: 46774
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)