Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0686 + 6049563-6050900                                           31   0.84 
03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219           29   3.4  
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    28   6.0  

>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 378 KQRRLQNSYKIRLNKICISKLPCLLLSPLRGTGDAPSLSG 497
           ++ ++Q + + +L K+  ++ P L+ +P RGTGD P  +G
Sbjct: 72  QRHQIQANARRKLTKLFPTRAPPLVAAPSRGTGDPPVSTG 111


>03_02_0533 - 9263910-9264211,9264564-9264706,9265134-9265219
          Length = 176

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 441 PCLLLSPLRGTGDAPSLSGAETSRGAARHSDGAPL 545
           PC  L+P + TG   ++SG +      RH +G PL
Sbjct: 120 PCAGLAPSKATGRT-TISGGDRRSQTERHGEGTPL 153


>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 SAPLRLGASPVPRSGLSKRHGSLDMHILLSLILY 401
           +APL  GA+P+  SG  + H   D+H+L +  L+
Sbjct: 17  AAPLLAGAAPLGYSGHRRSHAG-DLHVLSAAFLF 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,828
Number of Sequences: 37544
Number of extensions: 243460
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)