Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       30   1.5  
SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  

>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = -2

Query: 583 TICVNIILYYNYVNGAPSE*RAAPRDVSAPLRLGASPVPRSGLSKRHGSLDMHILLSLIL 404
           T+C++ +L++N +N +  +  +      AP+R   +PVP S + ++       ++LSL++
Sbjct: 352 TLCISPLLHFNLINDSTKQSESHCYVSIAPIR---TPVPESSVDQKASMFASEVVLSLVV 408


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            LR H  H  F+   L++G+    N LFK KF
Sbjct: 930  LRTHFKHSQFIVVSLKDGMFNNANVLFKTKF 960


>SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 662 RRIDFKSHIVKLSFSSFRLIGFQKHVYDLCKYNIIL 555
           R I   SH+V+LS SS+RL     H+ +L  Y +IL
Sbjct: 74  RVIVLLSHLVELSISSYRL---SNHLVELSFYRVIL 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,289
Number of Sequences: 59808
Number of extensions: 313642
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)