Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance ...    31   5.0  
AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance ...    31   5.0  
AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance ...    31   5.0  
AK127434-1|BAC86978.1|  292|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated p...    31   5.0  

>BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance of
            chromosomes 2 protein.
          Length = 1197

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            LR H  H  F+   L+ G+    N LFK KF
Sbjct: 1131 LRTHFTHSQFIVVSLKEGMFNNANVLFKTKF 1161


>AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance of
            chromosomes 2 protein.
          Length = 1197

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            LR H  H  F+   L+ G+    N LFK KF
Sbjct: 1131 LRTHFTHSQFIVVSLKEGMFNNANVLFKTKF 1161


>AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance of
            chromosomes 2 protein.
          Length = 1197

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            LR H  H  F+   L+ G+    N LFK KF
Sbjct: 1131 LRTHFTHSQFIVVSLKEGMFNNANVLFKTKF 1161


>AK127434-1|BAC86978.1|  292|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45526 fis, clone BRTHA2027227. ).
          Length = 292

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 426 CISKLPCLLLSPLRGTGDAPSLSGAETSRGAARHSDGAP 542
           C   L C+LL+P RG G    L  ++  RG    +D  P
Sbjct: 124 CSPALCCVLLTPGRGRGSVAPLGSSQDGRGGCCPTDTVP 162


>AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated
            protein-E protein.
          Length = 1197

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            LR H  H  F+   L+ G+    N LFK KF
Sbjct: 1131 LRTHFTHSQFIVVSLKEGMFNNANVLFKTKF 1161


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,741,163
Number of Sequences: 237096
Number of extensions: 1350890
Number of successful extensions: 2065
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)