Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0795.Seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    29   2.2  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    28   6.6  
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains...    27   8.7  

>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
            (TITAN3) very strong similarity to SMC2-like condensin
            (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
            Pfam profiles PF02483: SMC family C-terminal domain,
            PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 271  LRAHLIHENFVYT*LENGVMMTYNKLFKVKF 179
            +RAH  H  F+   L+ G+    N LF+ KF
Sbjct: 1129 IRAHFPHSQFIVVSLKEGMFNNANVLFRTKF 1159


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +3

Query: 453 LSPLRGTGDAPSLSGAETSRGAARHSDG 536
           LSPLR T    SLSG  T RG  R   G
Sbjct: 6   LSPLRQTSVKSSLSGRSTPRGTPRVYSG 33


>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
           similarity to RNase GI:7768564 from [Nicotiana tabacum];
           contains Pfam profile PF00445: Ribonuclease T2 family
          Length = 247

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 87  YDVFKFSKTNIKTKYKFHSLLNLILQ 164
           +D   + +TN+K K+K H LLN+++Q
Sbjct: 129 FDQHSYFRTNLKFKHKVH-LLNILIQ 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,352
Number of Sequences: 28952
Number of extensions: 212996
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)