Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0794.Seq
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   6.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 312 QADHPRQVQRHHQVAGFQPTGRQG 383
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 312 QADHPRQVQRHHQVAGFQPTGRQG 383
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 463 LLRHPGTSSLLSDCKCLPILSACAHTPPCRPVGWNP 356
           +L+ P T     D K LP      H PP  PVG NP
Sbjct: 720 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 463 LLRHPGTSSLLSDCKCLPILSACAHTPPCRPVGWNP 356
           +L+ P T     D K LP      H PP  PVG NP
Sbjct: 612 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 646


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 256 SMKSTMEDEKLKEKISDSD 312
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 64  TVSKRFRYREVHQQGEQDHH 123
           T  K F  +E H++  +DHH
Sbjct: 5   TGEKPFECQECHKRFTRDHH 24


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 64  TVSKRFRYREVHQQGEQDHH 123
           T  K F  +E H++  +DHH
Sbjct: 158 TGEKPFECQECHKRFTRDHH 177


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 309 RVRDLFLELLIL 274
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,535
Number of Sequences: 336
Number of extensions: 2520
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)