Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0794.Seq
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 86 5e-18
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 84 1e-17
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 66 4e-12
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 54 1e-08
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 52 1e-07
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.77
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 1.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 28 1.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 27 1.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 1.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 2.3
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 27 3.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 3.1
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 4.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.4
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 5.4
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 7.2
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.2
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 9.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.5
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 85.8 bits (203), Expect = 5e-18
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = +2
Query: 74 NVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALESY 250
NVSA+EK T K KITITNDKGRLSKEEI+RMV+EAEK + ED+ + IQAKN LESY
Sbjct: 485 NVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESY 543
Score = 78.6 bits (185), Expect = 7e-16
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = +1
Query: 256 SMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPII 435
S++++++D LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+
Sbjct: 546 SLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIM 605
Query: 436 TKMYQ 450
K+YQ
Sbjct: 606 AKIYQ 610
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GIPPAPRGVPQIEVTFDIDANGI 71
GIPPAPRGVPQIEVTFD+DANGI
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGI 483
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 84.2 bits (199), Expect = 1e-17
Identities = 42/59 (71%), Positives = 47/59 (79%)
Frame = +2
Query: 74 NVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALESY 250
NVSA+EK T K KITITNDKGRLSKEEI+RMV EAEK + ED+ + IQAKN LESY
Sbjct: 485 NVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESY 543
Score = 77.8 bits (183), Expect = 1e-15
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = +1
Query: 256 SMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPII 435
S++++++D LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+
Sbjct: 546 SLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIM 605
Query: 436 TKMYQ 450
K+YQ
Sbjct: 606 AKIYQ 610
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GIPPAPRGVPQIEVTFDIDANGI 71
GIPPAPRGVPQIEVTFD+DANGI
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGI 483
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +2
Query: 77 VSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALESY 250
VSA++KS K K+ I NDKGRLS+E+IERMV EAE+ ED KE I+A+N LE+Y
Sbjct: 515 VSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENY 573
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +3
Query: 3 GIPPAPRGVPQIEVTFDIDANGIQT 77
GIPPAPRGVPQIEVTF++DANG+ T
Sbjct: 490 GIPPAPRGVPQIEVTFEVDANGVLT 514
Score = 52.0 bits (119), Expect = 7e-08
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 274 EDEKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGICNPIITKMY 447
+DE+L K+ DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 583 DDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +2
Query: 74 NVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALESYC 253
NVSA +K+TNK++ IT+ G L+ EIE MV +AEK R D +KE I+ N ES C
Sbjct: 528 NVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVC 586
Query: 254 S 256
+
Sbjct: 587 T 587
Score = 42.3 bits (95), Expect = 6e-05
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +3
Query: 3 GIPPAPRGVPQIEVTFDIDANGI 71
GI PAP+G PQIEV+FD+DA+GI
Sbjct: 504 GIAPAPKGQPQIEVSFDVDADGI 526
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = +2
Query: 77 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALESYCS 256
V+A+EK+T + I ITN G LS +I+ M+ A+K + +D + ++AK+ LESY S
Sbjct: 491 VTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYIS 550
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 3 GIPPAPRGVPQIEVTFDIDANGI 71
GIPP PRG ++E TF++DANGI
Sbjct: 466 GIPPMPRGQAELEATFELDANGI 488
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 289 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 414
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 101 NKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALES 247
NK+ K T D SKEE+E +V E E D +Q + K+ L++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKA 573
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 134 KGRLSKEEIERMVNEAEK*RNEDD 205
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 1 PGSHR-RRVACLKLRSPSTSMPTVSKRFRYREVHQ-QGEQDHHYQRQRSSLQGRDRA 165
PG+ + R AC+K +S + S+P+ S YR+ G+ R S R RA
Sbjct: 30 PGTSKLHRAACIKRKSINLSLPSNSYSLSYRQSDDTDGDVSESQSEYRLSSGRRSRA 86
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 74 NVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKE--TIQAKNA 238
NVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q +A
Sbjct: 64 NVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDA 120
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 41 GHLRHRCQRYPNVSAIEKSTNKENKIT----ITNDKGRLSKEEIE 163
GHL + P VS IEK+T + +T N G+L K EIE
Sbjct: 1206 GHLDLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIE 1250
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 144 SPRKRSSVW*MRQRSKETRMTSKRRPSRPRMHWNLTAQH-EVYH 272
S R+R S S +R +K PS R H+ L QH E+ H
Sbjct: 288 SKRRRVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEH 331
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +1
Query: 217 DHPGQECIGILLLSMKSTM-EDEKLKEK------ISDSDKQTILDKCNDTIKWLDSNQLA 375
D +E I L +++ T+ +D++L E+ I +K T+ D+ NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 376 DK 381
DK
Sbjct: 238 DK 239
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 146 SKEEIERMVNEAEK*RNEDDKQKETIQAKNALESYCS 256
S+ E +++ E ++ ED+KQ E + K AL+ +CS
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCS 335
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 92 KSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQ-KETIQAKNALESY 250
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEY 586
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 77 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNA 238
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 250 LLSMKSTMEDEKLKEKISD 306
++S+K MEDEKL EK+++
Sbjct: 112 VISLKLIMEDEKLIEKVNE 130
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 67 PLASMSKVTSI*GTPRGAGGIP 2
PLA MS TSI G G GG P
Sbjct: 81 PLADMSAGTSIMGNNFGFGGFP 102
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 469 RGLLRHPGTSSLLSDCKCLPILSA-CAH 389
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 92 KSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNEDDKQKET 220
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 271 MEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 414
+E EK KEK D D++ DT+ D NQ+ +E E QKE++
Sbjct: 270 LEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = +1
Query: 271 MEDEKLKEKISDSDKQTILDKCNDTIKWL 357
+++++++ K+S D L+ CN+ + L
Sbjct: 260 LKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 134 KGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALE 244
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 134 KGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALES 247
+GR + + N+ E + DDKQ + KN+LE+
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLET 1296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,843
Number of Sequences: 5004
Number of extensions: 39761
Number of successful extensions: 207
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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