Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0794.Seq
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.2  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    25   2.1  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    24   3.6  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   4.8  
EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.     23   6.3  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   6.3  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 71   PNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK*RNE 199
            PN+ A++K      KI  TN++   ++++ ++     EK +NE
Sbjct: 1023 PNMKAMQKLDRVTEKIQSTNEEFEAARKKAKKAKAAFEKVKNE 1065


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 128 NDKGRLSKEEIERMVNEAEK*RNEDDKQKETIQAKNALES 247
           N++ R  +EE ++M NE+ K   +   QK+  Q    + S
Sbjct: 204 NEQARREREEQDKMKNESLKSAQQHHSQKQAQQEHTVVGS 243


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -2

Query: 609 KVVVTGRFTCGVECWFNRPPRWWGQRLQPRGRHLGSGCSAREARHTSGDSSG 454
           ++V  GR     + ++  P   W     PR   +G+G ++    +++  SSG
Sbjct: 652 ELVGGGRLNGPADRYYTDPCATWRYEESPRKPDVGAGTASAGTTNSTSSSSG 703


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 58  MPTVSKRFRYREVHQQGEQDHHYQRQRSSLQ 150
           +P   ++ R ++ HQQ +Q    QRQ+   Q
Sbjct: 298 VPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQ 328


>EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 223 PGQECIGILLLSMKSTMEDEKLKEKIS 303
           P ++C+   LL      E EK KEK+S
Sbjct: 144 PTRKCLSNALLPSVYNQEFEKAKEKLS 170


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 49  STSMPTVSKRFRYREVHQQGEQDHHYQRQ 135
           ST + + +    Y    QQ +Q HH+Q Q
Sbjct: 289 STVLGSATDNNNYILAQQQQQQHHHHQHQ 317


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,397
Number of Sequences: 2352
Number of extensions: 12013
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)