Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0793.Seq
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 1.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 1.9
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.2
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 3.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.3
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 4.3
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 7.5
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 9.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 261 IAKSFSPLQKRPRSMQVESPQARKP 187
I+ S SPLQK + Q+ESP A P
Sbjct: 251 ISPSISPLQKVNKQQQIESPTATFP 275
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 83 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 196
+Q K +KN K+KN ++KPLL TE CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 230 LFCNGEKDLAMDLMKILVILTTTQIEL 310
L N + DL +DL KIL+ILT EL
Sbjct: 252 LLLNEKSDLNVDLCKILIILTCMLEEL 278
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = -1
Query: 391 RVSRRGSLCRPRSRSSQEGHTARNRMAELYLGRCQYHKNFHQIHRQVLFA 242
R + G++ R RS G R+A + + C++H N + L +
Sbjct: 121 RREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLIS 170
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -1
Query: 226 AFNASRVAASEEAILTEWFFSV-----QERLYFTLLVLELTIFHSIFPIAGLFLNIEE 68
++N S + EE +LT WF S+ FT+L+L+ + + I + + IEE
Sbjct: 1396 SYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNPILLNLPISVKIEE 1453
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 124 LTIFHSIFPIAGLFLNIEEQTGRATYSLYSRGSTLDDVATV 2
L IF SI + G F + + TG+A + +S + +D V V
Sbjct: 11 LQIFGSILFLLGFFPHKNDSTGKAMSNQFSPPAVIDQVVFV 51
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 38 IQAIRCPAGLFFDIEKQTCDWKDAVKN 118
++A+RCP L+ + QT WK K+
Sbjct: 32 VRALRCPIWLWPTYDAQTIPWKKKKKS 58
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 292 NDPNRAPPCDSSQCVLPD-CFCSEDGTVI---PGDLPARDVPQMITITFDDAINNNNIEL 459
+DP+ +PP SS PD FC+ T + D+ + + +TF D + + +
Sbjct: 142 SDPSSSPPPSSSLLKTPDNDFCARPETFVKSDTADIKLQIHQNNLVLTFLDTTTVSKVNI 201
Query: 460 YKEI 471
EI
Sbjct: 202 VLEI 205
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 618 ERFWSNATVDDWGKEMAGMRVIIEKFSNITDNSVVGVRAPYLRVGGNN 761
E +S +T+D E + R ++++FSN + ++AP G +N
Sbjct: 1640 EESYSFSTIDIQSFENSIYREVLQRFSNAPLSPFSSIKAPSSLAGSSN 1687
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 191 SHLDRVVLQCTREALFYAPCS 129
S L++V L RE LFY CS
Sbjct: 198 SRLNQVSLSIDREGLFYGQCS 218
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 511 LYRNRSGFCACR*ISLCTIQCCYC*SHH 428
+++ ++ C C I LC I C+ +H
Sbjct: 1034 IWKKKTYVCLCTTIGLCNIYLCFANENH 1061
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,593
Number of Sequences: 5004
Number of extensions: 70211
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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