Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0793.Seq
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339...    29   4.5  
05_01_0601 + 5390484-5391692                                           28   7.9  

>02_04_0207 +
           20933319-20933427,20933503-20933701,20933785-20933931,
           20934683-20934764,20935542-20935697,20935948-20936121,
           20936278-20936349,20937012-20937083,20937322-20937440,
           20937540-20937625,20937747-20937799,20938076-20938153
          Length = 448

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 358 EDGTVIPGDLPARDVPQMITITFDDA 435
           EDG +  GD   R VP ++T  FDDA
Sbjct: 48  EDGQLGHGDAEDRPVPTVLTAAFDDA 73


>05_01_0601 + 5390484-5391692
          Length = 402

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 203 GDSTCIERGLFCNGEKDLAMDLMKILVILTTTQIELRHAIPRSVSFL 343
           G + C  RG++C+   D A     ++  +   +  LR  +P +VS L
Sbjct: 63  GPNVCAYRGVYCSAPPDDAAASGAVVAGIDLNRANLRGTLPAAVSLL 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,442,602
Number of Sequences: 37544
Number of extensions: 478129
Number of successful extensions: 1365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)