Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0793.Seq
(829 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 96 3e-20
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 6e-20
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.023
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 33 0.21
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 33 0.37
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 33 0.37
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 32 0.49
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 32 0.49
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.49
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.49
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25628| Best HMM Match : RVT_1 (HMM E-Value=0.17) 31 1.5
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 30 2.6
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 30 2.6
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 29 3.5
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 29 3.5
SB_53137| Best HMM Match : ABC_membrane_2 (HMM E-Value=1.2e-07) 29 4.6
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 29 4.6
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 29 6.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.0
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 8.0
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) 28 8.0
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 96.3 bits (229), Expect = 3e-20
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEM 665
+ P +AT+FVSH+YT Y +Q + + HEIA HSI+H +W NATV W E
Sbjct: 623 KNPNGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWWKNATVKQWTDEA 682
Query: 666 AGMRVIIEKFSNITDNSVVGVRAPYLRVGGNNR-SP*WKNRHSYTTAL 806
AGMR I+ KF + V G RAP+L++GG+N N+ +Y T++
Sbjct: 683 AGMREILRKFGGVNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSM 730
Score = 82.6 bits (195), Expect = 4e-16
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +1
Query: 307 APPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKR 486
A C C LP+CFCS G ++PG L +++PQMI +TFDDAIN +Y++IFNGK
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGK- 622
Query: 487 KNPNGCD 507
KNPNGCD
Sbjct: 623 KNPNGCD 629
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 95.1 bits (226), Expect = 6e-20
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEM 665
+ P +AT+FVSH+YT+Y + + + HEIA H+I+H +W AT DWG E+
Sbjct: 1593 KNPNGCNVRATFFVSHEYTDYQLLGTLYHERHEIADHTISHRTPIEWWKKATYQDWGSEI 1652
Query: 666 AGMRVIIEKFSNITDNSVVGVRAPYLRVGGNNR 764
GMR I+++F + + V G RAP+L++GG+N+
Sbjct: 1653 RGMRDILKEFGGVNEKDVRGFRAPFLQIGGDNQ 1685
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1
Query: 358 EDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCD 507
E G +P L + +PQMI +TFDDAIN Y+ + N KNPNGC+
Sbjct: 1551 ECGASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLN-DTKNPNGCN 1599
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 62.9 bits (146), Expect = 3e-10
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3
Query: 513 ATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDW 653
AT+F+SH YTNY ++ H +GHE+A H++TH +W +AT ++W
Sbjct: 94 ATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYWEDATYEEW 140
Score = 58.0 bits (134), Expect = 9e-09
Identities = 32/68 (47%), Positives = 37/68 (54%)
Frame = +1
Query: 301 NRAPPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNG 480
N A CD +C P+C CS+D PG L PQ+I ITFDD I N E YK+ G
Sbjct: 25 NVAEKCDLEKCQPPNCRCSDDFQP-PGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 481 KRKNPNGC 504
NPNGC
Sbjct: 84 -FTNPNGC 90
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 36.7 bits (81), Expect = 0.023
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPL 178
+C QC A + RCPAGL + ++K CDW V + + PL T +P
Sbjct: 1251 DCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCDRTTSTPPTPTPLTPTTKPA 1310
Query: 179 C 181
C
Sbjct: 1311 C 1311
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 100
+C QC A + RCPAGL + ++K TCDW
Sbjct: 1006 DCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDW 1039
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 100
+C QC A + RCPAGL + ++K CDW
Sbjct: 901 DCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDW 934
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 100
+C QC A + RCPAGL + ++K CDW
Sbjct: 1151 DCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDW 1184
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAV 112
+C C S + RCP GL + + K+TCD+ V
Sbjct: 581 DCAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLV 618
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPL 178
+C QC A + RC GL + I K TCDW V + P T +P
Sbjct: 796 DCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRNVDCDRKTPTPPSPTPPTTTPKPA 855
Query: 179 C 181
C
Sbjct: 856 C 856
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 35.1 bits (77), Expect = 0.070
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAV 112
NC + C+ I + CP+ L +D K C+W D V
Sbjct: 531 NCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV 567
Score = 34.7 bits (76), Expect = 0.093
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
NC I C+ CP L FD +K C+W + V NCK
Sbjct: 610 NCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKV-NCK 649
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVK 115
NC + C CP GL F+ + CDW VK
Sbjct: 471 NCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVK 508
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 5 CRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 100
C+ I C+ + CPAGL ++ EK+ CDW
Sbjct: 100 CKMYIACSNGIAYEMPCPAGLNWNDEKKYCDW 131
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 107 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGE 247
A+ N + + IKP C G C + CI + L+C+G+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGD 113
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 256 GDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 363
GDGSDE C PN C S C+ C D
Sbjct: 2483 GDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCDGD 2518
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKDLA 259
C DG +C D CI R C+G D A
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCA 3233
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 100
NC+ I C+ +CPAGL ++ K+ CDW
Sbjct: 75 NCKMYITCSNKITYERQCPAGLNWNDAKKWCDW 107
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 100
NC QC A + CP+GL + + K TCDW
Sbjct: 128 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 161
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 100
NC QC A + CP+GL + + K TCDW
Sbjct: 35 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 68
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 5 CRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKLKN 133
CR I C CP GL ++ + + CDW V +C + N
Sbjct: 91 CRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNV-DCPMGN 132
>SB_25628| Best HMM Match : RVT_1 (HMM E-Value=0.17)
Length = 526
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 605 RNRMNCDFVTLAVSFLDGRIVSVLVRDKISG-LVSQPFGFLRLPLNISLYNSMLLLLIAS 429
R +NCDF L S + RIV + D++ G + PFG P +Y + L A
Sbjct: 123 RLSLNCDFGALRDSLIRDRIVGGVTSDELRGEFLRLPFGISSAP---EIYQREMDRLFAG 179
Query: 428 SKVIVII 408
V +I+
Sbjct: 180 VPVEIIV 186
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/53 (20%), Positives = 25/53 (47%)
Frame = +2
Query: 107 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDLAMD 265
A+++ ++ ++ P++ C D C + C+ + CNG +D +D
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVD 687
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKD 253
C+ C D C+ FCNGE D
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESD 98
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKD 253
C+ C D C+ FCNGE D
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESD 98
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNAT 641
Q P + ++ T+ +H+YT+ Q TH+ H+ H TH ++ T
Sbjct: 118 QYPHQYTHQYTHQYTHQYTHQYTHQYTHQYTHQY-THQYTHQYTHQYTHQCT 168
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITH 608
Q P + ++ T+ +H+YT+ Q TH+ H+ H TH
Sbjct: 114 QYPHQYPHQYTHQYTHQYTHQYTHQYTHQYTHQY-THQYTH 153
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEK 250
C + C + C++RGL C+G+K
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDK 206
>SB_53137| Best HMM Match : ABC_membrane_2 (HMM E-Value=1.2e-07)
Length = 139
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = -3
Query: 584 FVTLAVSFLDGRIVSVLVRDKISGLVSQPFGFLRLPLNISLYNSMLLLL 438
F+++ V+ LDGR++ +V+ + + Q ++ + + + NSM+ L
Sbjct: 8 FLSIYVATLDGRVIKSIVQKNVPMFIVQLLKWIAVAIPATFINSMIRFL 56
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 256 GDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 363
GD SDEN+C CD+ +C+ C D
Sbjct: 214 GDNSDENNCPYSTCNPSQFKCDNGRCISSKWRCDHD 249
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKD 253
C C D TCI+R CNG+ D
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKID 28
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 208 VAASEEAILTEWFFSVQERLYFTLLVLELTIFHSIFPIAGLFLNIEEQTGRATYSLYSR- 32
V + +LT F SV F L ++ L I P+A EEQ G TY L +R
Sbjct: 1264 VEKKRKNVLTAMFVSVW--FIFGLFLMLLEFSQIISPLAWDRTRSEEQNGNHTYGLPNRY 1321
Query: 31 GST 23
GST
Sbjct: 1322 GST 1324
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 259 DGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPG 381
DG D++SCD D + D + V D C + G V G
Sbjct: 402 DGGDDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSGCVNDG 442
>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
Length = 362
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 53 CPAGLFFDIEKQTCDWKDA 109
CP+ L+ DIE TC+W++A
Sbjct: 122 CPS-LYIDIEGSTCEWRNA 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,350,445
Number of Sequences: 59808
Number of extensions: 567844
Number of successful extensions: 2160
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -