Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0793.Seq
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 76 4e-14
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 71 8e-13
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 71 8e-13
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 71 8e-13
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 40 0.002
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 40 0.002
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 36 0.035
U00036-3|AAT92065.1| 529|Caenorhabditis elegans Dumpy : shorter... 36 0.047
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 36 0.047
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 33 0.19
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical pr... 31 0.76
AL031630-17|CAA20998.1| 198|Caenorhabditis elegans Hypothetical... 31 1.0
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 2.3
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 30 2.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 2.3
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 29 4.1
AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical ... 29 5.4
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 5.4
AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical... 29 5.4
AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical... 29 5.4
AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical... 29 5.4
U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b prot... 28 7.1
Z96048-1|CAB09419.1| 351|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z82051-8|CAB04814.1| 349|Caenorhabditis elegans Hypothetical pr... 28 9.4
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 28 9.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 9.4
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 75.8 bits (178), Expect = 4e-14
Identities = 38/91 (41%), Positives = 54/91 (59%)
Frame = +3
Query: 492 PERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMAG 671
P KAT+F+SH++TNY AV +K EIA +SI+H E NA + W EM G
Sbjct: 1558 PNGCDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISHESLE----NANTNRWLNEMDG 1613
Query: 672 MRVIIEKFSNITDNSVVGVRAPYLRVGGNNR 764
R I+ KF + +VG+R+P L +GG+N+
Sbjct: 1614 QRRILAKFGGAPEEEIVGIRSPQLALGGDNQ 1644
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 379 GDLPARDVPQMITITFDDAINNNNIELYKEIF 474
G L + PQ + +TFDDA+N YK++F
Sbjct: 1496 GCLRPDETPQFVVLTFDDAVNGKTFSDYKKLF 1527
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEM 665
+ P K T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 83 RNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQ 138
Query: 666 AGMRVIIEKFSNITDNSVVGVRAPYLRVGGN 758
GMR + +FS I + ++G RAP L++GG+
Sbjct: 139 KGMRETLAEFSFIDRSHIIGTRAPELKIGGD 169
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 313 PCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKN 492
P D S C LP CFC+ G + P + + VPQM+ ++FDD I + I K +F+G +N
Sbjct: 26 PRDGS-CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRN 84
Query: 493 PNGC 504
PNGC
Sbjct: 85 PNGC 88
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEM 665
+ P K T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 2152 RNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQ 2207
Query: 666 AGMRVIIEKFSNITDNSVVGVRAPYLRVGGN 758
GMR + +FS I + ++G RAP L++GG+
Sbjct: 2208 KGMRETLAEFSFIDRSHIIGTRAPELKIGGD 2238
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 313 PCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKN 492
P D S C LP CFC+ G + P + + VPQM+ ++FDD I + I K +F+G +N
Sbjct: 2095 PRDGS-CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRN 2153
Query: 493 PNGC 504
PNGC
Sbjct: 2154 PNGC 2157
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +3
Query: 486 QKPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEM 665
+ P K T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 1024 RNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQ 1079
Query: 666 AGMRVIIEKFSNITDNSVVGVRAPYLRVGGN 758
GMR + +FS I + ++G RAP L++GG+
Sbjct: 1080 KGMRETLAEFSFIDRSHIIGTRAPELKIGGD 1110
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 313 PCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKN 492
P D S C LP CFC+ G + P + + VPQM+ ++FDD I + I K +F+G +N
Sbjct: 967 PRDGS-CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRN 1025
Query: 493 PNGC 504
PNGC
Sbjct: 1026 PNGC 1029
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 23 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
CT + + + CP LF+D + Q C WK V+ CK
Sbjct: 158 CTTNTARFLSCPTPLFYDADSQKCIWKSLVEECK 191
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK-LKNKERKIKPLLYTEEPLCQDGF 193
+ C+ + + CPA L F+ CDW V C L + + Y C F
Sbjct: 265 LTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTPQPTCEEDGYFSFGQCSSSF 324
Query: 194 LACGDSTCIERGLFC 238
AC + I +FC
Sbjct: 325 TACTNGRAIV--MFC 337
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 23 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
CT + CPAGL F CD++ V C+
Sbjct: 327 CTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQ 360
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
+ C+ + + CPA L ++ CDW+ V C+
Sbjct: 42 LTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 23 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
CT + + + CP LF+D + Q C WK V+ CK
Sbjct: 158 CTTNTARFLSCPTPLFYDADSQKCIWKSLVEECK 191
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK-LKNKERKIKPLLYTEEPLCQDGF 193
+ C+ + + CPA L F+ CDW V C L + + Y C F
Sbjct: 265 LTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTPQPTCEEDGYFSFGQCSSSF 324
Query: 194 LACGDSTCIERGLFC 238
AC + I +FC
Sbjct: 325 TACTNGRAIV--MFC 337
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 23 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
CT + CPAGL F CD++ V C+
Sbjct: 327 CTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQ 360
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
+ C+ + + CPA L ++ CDW+ V C+
Sbjct: 42 LTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 35.9 bits (79), Expect = 0.035
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 2 NCRDV-IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 121
+C D I C RCPAGLF+ CD+K+ V++C
Sbjct: 799 DCEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHVEDC 839
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 5 CRDVIQCTASG-IQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
C+ V A+G + A CPA L F+ CD+ V++C+
Sbjct: 587 CKSVFYICANGQVVATTCPANLIFNPYVGECDYSTNVRDCQ 627
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 8 RDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKL 127
+D +QC C GLF++ + C +K V CK+
Sbjct: 904 QDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTVDTCKI 943
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 20 QCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 121
QC+ + CP L + +++ CD+ ++VK+C
Sbjct: 223 QCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDC 256
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 14 VIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 121
+I+C CP+GL++ + CD K+ V+ C
Sbjct: 705 LIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVEGC 740
>U00036-3|AAT92065.1| 529|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform b protein.
Length = 529
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 327 AVCPS*LLLLRGRHSDPRRLTRQRCP 404
AVCPS L RG ++DPRR R RCP
Sbjct: 327 AVCPSKLPCQRGGYTDPRRCDRCRCP 352
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 327 AVCPS*LLLLRGRHSDPRRLTRQRCP 404
AVCPS L RG ++DPRR R RCP
Sbjct: 327 AVCPSKLPCQRGGYTDPRRCDRCRCP 352
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 124
IQC+ S C L+FD Q+C ++D V C+
Sbjct: 802 IQCSDSAASVRECEGSLYFDERSQSCRFRDEVFKCQ 837
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 121
NC +C + CP+G F+ CDW AV +C
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSC 1296
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 17 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 121
IQC+ RC L+F+ Q C ++D V C
Sbjct: 709 IQCSNGAAIVRRCGESLYFNEATQECTYRDEVPEC 743
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 5 CRDVI-QCTASGIQAIRCPAGLFFDIEKQTCDWK 103
C DV C+ + + CP G F+I +Q+CD++
Sbjct: 205 CNDVFYSCSNNMVFQRYCPPGTVFNINQQSCDFQ 238
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 33.1 bits (72), Expect = 0.25
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 5 CRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDAVKNCKLKNKERKIKPLL--YTEEP 175
C +V + GI R CPA L F+ +CDW V +C K+++ + + Y
Sbjct: 190 CSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCSEKSEKPQNCGEVDGYFSFG 249
Query: 176 LCQDGFLACGDSTCIERGLFC 238
C F AC + I +FC
Sbjct: 250 RCSSSFSACTNGIPIV--MFC 268
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 CRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDAVKNCKLKN 133
C +GI + CP GL F + Q CD++ V C L++
Sbjct: 251 CSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLES 294
>Z83114-4|CAB05554.4| 739|Caenorhabditis elegans Hypothetical
protein K09B11.10 protein.
Length = 739
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 316 CDSSQCVLPDCFCSEDGTV-IPGDLPARDVPQMITITFD 429
CD C + FCS + TV PGD+P P T+T +
Sbjct: 593 CDQLVCNFRETFCSYETTVEKPGDVPVIKTPNGATVTLN 631
>AL031630-17|CAA20998.1| 198|Caenorhabditis elegans Hypothetical
protein Y38H6C.19 protein.
Length = 198
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 161 YTEEPLCQDGFLACGDSTCIERGLFCNGEKDLAMDLMKI 277
+T + C DGF CG T IER NG+ D A++ + I
Sbjct: 155 WTGDHFCPDGFAVCGIQTQIERSQGGNGD-DTALNNVNI 192
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 271 ENSCDIDNDPNRAPPCDSSQCVLPDCFCSE 360
E+SCD + P P C +S C P C C E
Sbjct: 337 EHSCDWTHFPETTPNCPNS-CGTPRCICKE 365
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKDLA 259
C +G CG CIE L CN + D A
Sbjct: 431 CLEGQFKCGTGQCIEESLKCNRKYDCA 457
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKDLA 259
C +G CG CIE L CN + D A
Sbjct: 431 CLEGQFKCGTGQCIEESLKCNRKYDCA 457
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 164 TEEPLCQDGFLACG--DSTCIERGLFCNGEKD 253
T EP C + ACG D+ CI + +C+GE D
Sbjct: 3622 TCEPNCTERQFACGGDDAKCIPKLWYCDGEPD 3653
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPLLYTE 169
+C D + + A C F + C WK D ++C + E K T
Sbjct: 1253 DCEDGSDEDSCAVTAESCTPDQFKCVSSGLCIPASWKCDGQQDCDDGSDEPKFG---CTS 1309
Query: 170 EPLCQDGFLACGDSTCIERGLFCNGEKD 253
C CG+ CI C+GE D
Sbjct: 1310 GRQCSSDQFKCGNGRCILNNWLCDGEND 1337
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 167 EEPLCQDGFLACGDSTCIERGLFCNGEKD 253
E P C G C +CI CNG D
Sbjct: 179 ERPACVQGSYFCSSGSCISESKKCNGHND 207
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 164 TEEPLCQDGFLACG--DSTCIERGLFCNGEKD 253
T EP C + ACG D+ CI + +C+GE D
Sbjct: 3622 TCEPNCTERQFACGGDDAKCIPKLWYCDGEPD 3653
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPLLYTE 169
+C D + + A C F + C WK D ++C + E K T
Sbjct: 1253 DCEDGSDEDSCAVTAESCTPDQFKCVSSGLCIPASWKCDGQQDCDDGSDEPKFG---CTS 1309
Query: 170 EPLCQDGFLACGDSTCIERGLFCNGEKD 253
C CG+ CI C+GE D
Sbjct: 1310 GRQCSSDQFKCGNGRCILNNWLCDGEND 1337
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCD 97
NC++ QC ASG+ R C G +D K TCD
Sbjct: 171 NCKNFYQC-ASGLWTQRSCGEGTIWDQHKLTCD 202
>AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical
protein Y43E12A.1 protein.
Length = 317
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 265 IHRQVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIF 113
+H + + V + + N V + IL +W V R + T L LTIF
Sbjct: 40 VHHEKKY-VLDDSFINGGNVNSKMRRILVDWLIQVHLRFHLTPETLHLTIF 89
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 161 YTEEPLCQDGFLACGDSTCIERGLFCNGEKDLA 259
Y +C+ G+ CG+ CI CN D A
Sbjct: 9 YCSTRVCRPGYFNCGNGLCIPEQKVCNRINDCA 41
>AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical
protein Y47G6A.19b protein.
Length = 438
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 492 PERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 656
PE Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.19a protein.
Length = 468
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 492 PERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 656
PE Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical
protein Y47G6A.19c protein.
Length = 464
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 492 PERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 656
PE Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>U58751-8|AAB00659.2| 635|Caenorhabditis elegans Hypothetical
protein C07G1.2 protein.
Length = 635
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 179 CQDGFLACGDSTCIERGLFCNGEKD 253
CQ ACGD +CI CNG+ D
Sbjct: 554 CQQA--ACGDGSCIRFDQLCNGQID 576
>AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b protein
2.2 protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 265 IHRQVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIF 113
+H + + V + + N V + IL +W V R + T L LTIF
Sbjct: 62 VHHEKKY-VLDDSFINGGNVNSKMRRILVDWLVQVHLRFHLTPETLHLTIF 111
>Z96048-1|CAB09419.1| 351|Caenorhabditis elegans Hypothetical
protein F57A10.1 protein.
Length = 351
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 642 VDDWGKEMAGMRVIIEKFSNITDNSVVGVRA 734
+DD+G+E G +++ NITD V+G+ A
Sbjct: 161 MDDFGREYLGGEILLRYERNITDIPVLGLIA 191
>Z82051-8|CAB04814.1| 349|Caenorhabditis elegans Hypothetical
protein T23D5.11 protein.
Length = 349
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 642 VDDWGKEMAGMRVIIEKFSNITDNSVVGVRA 734
+DD+G+E G +++ NITD V+G+ A
Sbjct: 146 MDDFGREYLGGEILLRYERNITDIPVLGLIA 176
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 352 RSSQEGHTARNRMAELYLGRCQYHKNFHQIHRQVLFAVTEKTAFNASRVAASEEAILTEW 173
+SS H A +M+E + R K+ H I ++ + EK +F++ + + + T W
Sbjct: 141 KSSSVSHVATEQMSEHLVMRS---KSEHHISEKLQERLIEKESFSSQEFISENQGVHTHW 197
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 352 RSSQEGHTARNRMAELYLGRCQYHKNFHQIHRQVLFAVTEKTAFNASRVAASEEAILTEW 173
+SS H A +M+E + R K+ H I ++ + EK +F++ + + + T W
Sbjct: 4987 KSSSVSHVATEQMSEHLVMRS---KSEHHISEKLQERLIEKESFSSQEFISENQGVHTHW 5043
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,177,563
Number of Sequences: 27780
Number of extensions: 416396
Number of successful extensions: 1505
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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