Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0793.Seq
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.37 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.37 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 489 KPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERF 626
           KPE +RYK  +F+       S++ E++ K +EI ++     DD+ F
Sbjct: 612 KPEGMRYKMFFFL-------SSMDESNTKSYEIPLYGKMTLDDKVF 650


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 489 KPERLRYKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERF 626
           KPE +RYK  +F+       S++ E++ K +EI ++     DD+ F
Sbjct: 612 KPEGMRYKMFFFL-------SSMDESNTKSYEIPLYGKMTLDDKVF 650


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 426 EGDSDHLRDISGG*VAGDHCAVLGAEAV 343
           + D D + D++G     DH A +GA+A+
Sbjct: 42  DSDGDGIGDLNGITARMDHIADIGADAL 69


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 545 VSVLVRDKISGLVSQPFGFLRLPL 474
           V + ++    G  S+PF FL LPL
Sbjct: 302 VYIQLKRPSDGATSEPFPFLMLPL 325


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 545 VSVLVRDKISGLVSQPFGFLRLPL 474
           V + ++    G  S+PF FL LPL
Sbjct: 302 VYIQLKRPSDGATSEPFPFLMLPL 325


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 232 KTAFNASRVAASEEAILTEWFFSVQERLYFTL 137
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 627 WSNATVDDWGKEMAGMRVIIEKFSN--ITDNSVVGVRAP 737
           WS A   D  K ++  ++ I+KF    + D+ +V    P
Sbjct: 111 WSFAEFKDCSKIVSAFKIAIDKFDRLWVLDSGLVNRTVP 149


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 136 LVLELTIFHSIFPIAGLFLNI 74
           +V+ LTI + I  + G+F NI
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNI 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,907
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)