Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0793.Seq
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63670.1 68414.m07205 expressed protein                             30   2.2  
At1g08890.1 68414.m00989 sugar transporter family protein simila...    29   5.0  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    28   6.6  
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    28   8.7  

>At1g63670.1 68414.m07205 expressed protein
          Length = 689

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 268 DENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFD----DA 435
           +   C+I +DP +     S   VL      ED TVIPG++   ++ + I ++FD    D 
Sbjct: 463 ERQDCNI-HDPKQEQEQPSPVSVLERIHL-EDETVIPGNVKISNLEEKIGLSFDDPNIDL 520

Query: 436 INNNNI-ELYKEIFNGKRKN 492
           I   ++ E  K++    R N
Sbjct: 521 IEKESVHEFVKKVLEASRLN 540


>At1g08890.1 68414.m00989 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 464

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 147 ILRSLFLSLQFFTASFQSQVCFSISKNKPAGQRIAC---IPEAVHWM 16
           +L+S  +SL FFT +F      ++    P G ++ C   IPE+  W+
Sbjct: 160 LLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIPESPRWL 206


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 107 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDS 211
           A K+    N   K +P L T+   CQ+ F++ GDS
Sbjct: 82  AKKSASFANGAAKKEPSLKTQFQTCQEAFVSIGDS 116


>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 534 CARQNKWPCIATVRVFALAVKYL---FVQFNVVIVNRIIEGDSDH 409
           C R+ +W C     V   + K+L     ++N+VIV+ I+E D DH
Sbjct: 146 CTRERRW-CEFAEPVDGESTKFLQELAKKYNMVIVSPILERDIDH 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,059
Number of Sequences: 28952
Number of extensions: 378889
Number of successful extensions: 1135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)