Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0792X.Seq
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 82 5e-17
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 29 0.46
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 27 1.9
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 27 2.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.5
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 7.5
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 25 7.5
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 25 9.9
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 9.9
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.9
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.9
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 82.2 bits (194), Expect = 5e-17
Identities = 37/67 (55%), Positives = 45/67 (67%)
Frame = +2
Query: 308 DDPQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKKAGGKIIGVFKPKDEEPYGRLNPX 487
D + L+ + AI +G+FP I +GSSGSYFVK K I VFKPKDEEPYG+LNP
Sbjct: 127 DYKDYVRLLDATKEAIAHGVFPVLISKGSSGSYFVKNKVQKNIAVFKPKDEEPYGKLNPK 186
Query: 488 WMKWMHK 508
W KW H+
Sbjct: 187 WTKWFHR 193
Score = 30.3 bits (65), Expect = 0.20
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 517 PCCFGRSCLIPN 552
PC FGRSCLIPN
Sbjct: 197 PCFFGRSCLIPN 208
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.46
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 264 LAAAATSKYPSITSQMTPSSASWYYRRRRPLITASSRRGYTKDPAGRTS*KKRAEKSSAF 443
L + +S S S P S +Y R PL +S YT+ GRT AF
Sbjct: 347 LVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPSSRFYEYTRPTYGRTD--TSCSAPGAF 404
Query: 444 SSRKTKSPT 470
S + SP+
Sbjct: 405 CSTQINSPS 413
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 377 RIYQGSSGS-YFVKKAGGKIIGVF 445
++ QG+SGS Y K GGK +G+F
Sbjct: 314 KLGQGASGSVYLAKVVGGKQLGIF 337
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 412 YEVRPAGSLVYPLREDAVINGRLRL*YQLAELGV-IWEVIEGYFEVAAAAKQRLDSRFTP 236
+ ++P G L Y ++ R + +GV +W V G F AA L + TP
Sbjct: 120 FPIKPRG-LTYDFVGQRLLTSRASFSQVASFMGVCVWSVPIGIFVSFTAADNTLPTITTP 178
Query: 235 GESRLPSNSTAGTKQISSEL 176
S + S+ +++ S+ L
Sbjct: 179 SSSSPDAYSSGSSRRTSNVL 198
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.5
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Frame = +3
Query: 117 FDKPNTTTAPPDDGVVSLSSS-SEEICLVPAVEFEGNLDSPGVN-RESSRCLAAAATSKY 290
F KP TT+AP + V+ SSS + PA G+ + G + + + A+ AT K
Sbjct: 228 FGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFSFGKPAGQAASTATDK- 286
Query: 291 PSITSQMTPSSASWYYRRRRPLITASSRRGYTKDPAGRTS*KKRAEKSSAFSSRKTKSPT 470
T SSA + +P T + + + A + FS T PT
Sbjct: 287 ----GTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPATSTGDNKPTFSFGNTSKPT 342
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 7.5
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +3
Query: 132 TTTAPPDDGVVSLS-SSSEEICLVPAVEFEGNLDSPGVNRESSRCLAAAATSKYPSITSQ 308
++ P +DGV + S +S L P E + P + + + K PS S
Sbjct: 14 SSQTPQEDGVYTSSLHNSNNPFLAPKTE---RVADPVMESMADDLFNSIQKKKEPSPASS 70
Query: 309 MTPSSASWYYRRRRPLITASSRRGYTKDPAGRTS*KKRAEKSSAFSSRKTKSPT 470
+SAS + L S+ T DP R S RA + SS + +SP+
Sbjct: 71 ---ASASPVKKSAEALAERSNSSMGTFDPPPRYSKIARARSTHVASSSRHRSPS 121
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -3
Query: 223 LPSNSTAGTKQISSELLDNETTPSSGGAVVVFGLSKSRFNRVSSVLMSNVKRRSFTEPHL 44
L SN AG + SE + TTP+ AVV+ +K+R + +N K + +P++
Sbjct: 91 LESNEKAGLR---SEFSVDPTTPTGVCAVVLSNNNKNRSLCTNLGAANNYKLKDLQQPNV 147
Query: 43 F 41
+
Sbjct: 148 W 148
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 370 EDAVINGRLRL*YQLAELGVIWEVIEGYFEVAAAAKQRLDSRFTP 236
ED V GRL + E+G++W + + A A + +++ P
Sbjct: 142 EDEVFQGRLTSSLEKKEIGIVWS--KSFSTTAGRANLKRNNKDAP 184
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 329 LVLQAETAIDNGIFPERIYQG 391
L+ QAE ID GI P RI G
Sbjct: 118 LLEQAEALIDKGIHPIRIADG 138
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 426 PPAFFTKYDPLDPW 385
P A FT Y PL PW
Sbjct: 336 PDANFTLYTPLQPW 349
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 301 VIEGYFEVAAAAKQRLDSRFTPGESRLPSN 212
++EG ++ ++ ++ +R TPG+ LP N
Sbjct: 654 LVEGVVKILSSYRKVAANRLTPGQLVLPKN 683
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,724
Number of Sequences: 5004
Number of extensions: 46056
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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