Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0792X.Seq
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)    94   6e-20
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              28   4.5  
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               28   4.5  
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)          28   4.5  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   28   4.5  

>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
          Length = 851

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 46/68 (67%), Positives = 50/68 (73%)
 Frame = +2

Query: 278 DFEVSFNYFPDDPQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKKAGGKIIGVFKPKD 457
           D E S N   DDP+F+ ++  AE AID GI PERIYQGSSGSYFVK   GK IGVFKPKD
Sbjct: 488 DSEYSCNVI-DDPEFASVIRAAEQAIDAGILPERIYQGSSGSYFVKNKEGKKIGVFKPKD 546

Query: 458 EEPYGRLN 481
           EEPY  LN
Sbjct: 547 EEPYAHLN 554


>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -3

Query: 229 SRLPSNSTAGTKQISSELLDNETTPSSGGAVVVF-----GLSKSRFNRVSSVLMSNVKRR 65
           S LPS S+  T  + +    +E+ PSSG +  +        S SRF+ V+  L ++ +R 
Sbjct: 4   SSLPSTSSMRTTTVLTSASSSESVPSSGSSATLIIDQLSSASSSRFSDVAVTLSTDYRRP 63

Query: 64  S 62
           S
Sbjct: 64  S 64


>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 278 DFEVSFNYFPDDPQFSELVLQAETAID-NGIFPERIYQGSSGSYFVKKAGGKIIGVFKP 451
           D+E   ++  D   F E + +A++  D N   P+ + +   G +F+ + G ++IG+ KP
Sbjct: 92  DYETEVDWRNDMDSFREHMSRADSVSDDNENDPDSVERNGDG-FFITEPGIEVIGLEKP 149


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 357 ITASSRRGYTKDPAGRTS*KKRAEKSSAFSSRKTKSPT 470
           + A S +G ++ P+   S +K  +KS   SSRK++SP+
Sbjct: 208 VKAKSSKGRSRSPSKSPS-RKSGKKSGKKSSRKSRSPS 244


>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
          Length = 1054

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 135 TTAPPDDGVVSLSSSSEEICLVPAVEFEGNLDSPGVNRESSR 260
           TT PP D  V   S   E+  +PA+   G L    V  + SR
Sbjct: 801 TTEPPADKSVVTQSLETEVVPLPALSRSGTLQKADVTHQLSR 842


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 270 AAATSKYPSITSQMTPSSASWYYRRRRPLITASSRRGYTKDPA 398
           A+   + P  TSQ TPS A ++  +++PL+      G T  PA
Sbjct: 99  ASTVGRMPPTTSQSTPSPAPFF--QQQPLVPTPVTLGGTSAPA 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,821
Number of Sequences: 59808
Number of extensions: 345222
Number of successful extensions: 1079
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)