Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0792X.Seq
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.68 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.68 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 312 TPSSASWYYRRRRPLITASSRRGYTKDPAGRTS*KKRAEKSSAFSSRK-TKSPTVV 476
           TPS  S     ++    A S   +T   A + S KKR EKSSA   RK TK+  +V
Sbjct: 570 TPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKR-EKSSAKKERKATKTLAIV 624


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 68  TFNITHEYGRDSVESRFRQTKHNN 139
           T N  + Y RDS+    + TKH+N
Sbjct: 107 TKNCVNPYDRDSLSCWLQMTKHHN 130


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = -2

Query: 269 RQAAARLAVHSWRIQIALELDXWH 198
           RQAA +   ++++  + +++D W+
Sbjct: 51  RQAAIQSGEYNYKNNVPIDVDRWN 74


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 120 DKPNTTTAPPDDGVVSLSSSSEEICLVPA 206
           DKPN+TT     G   + S    + + PA
Sbjct: 277 DKPNSTTMNGSPGSGGIRSDQMGVKIEPA 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,981
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)