Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0791.Seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.75 
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    28   1.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   1.7  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    27   3.0  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   5.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.0  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   7.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   9.2  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 93  GGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHIHMYGGFLEA 260
           G  + HR  Y    +L SR+N+S +  +  +W+S +   + N    I     F  A
Sbjct: 784 GRAIRHRDDYASIILLDSRYNRSSIQRKLPNWLSKNIHSSPNFGPAIRQLATFFRA 839


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 390 WFLAESEIMKRVPSLMSSTVAVNKIITIPPEPLTVTTLEERRSPS 524
           WF+A+     R+PS  SS  + ++ +T  P  L +       SPS
Sbjct: 273 WFIADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPS 317


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 390 WFLAESEIMKRVPSLMSSTVAVNKIITIPPEPLTVTTLEER 512
           + +A  E+ K VP+L   TVA  KI  +P   L    L++R
Sbjct: 252 YVIAIKELAKTVPNLFRYTVAHQKISNLPTTDLWSFFLDKR 292


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 LGFQFIPSMRGILKGISICMAGFS 255
           LGFQF PS   +L  +S   +GF+
Sbjct: 39  LGFQFRPSSTNVLAEVSTATSGFN 62


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   IGNRVVRPTFSIARNLFTSPSDFTWLXTP 92
           IG   +  TFS  +N F + + + W+ TP
Sbjct: 278 IGISNIYSTFSCHKNTFFTSNSYVWILTP 306


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 96  GTVSHRTSYTRRTVLSSRHNKSVLLLRKMS 185
           G VSH  SY R   LS  HN+   +L  M+
Sbjct: 703 GCVSHTASYLRLWALSLAHNQLSSVLWNMT 732


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 120 YTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTK 224
           +T+  +L+   N  + +  K SW+ +HT+ + + K
Sbjct: 87  FTKNHLLACHDNGQISMWSKGSWLLVHTLKSSSHK 121


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 425 DTLHYFAFS*KPKRLAEFYTRRLRYIHDTPSPQLRVDQVLPSGPNRANHVSVTVVRFEKP 246
           +T   F++S  PK LAE YT  L+    T    + +D + P  P+  ++      +   P
Sbjct: 247 ETAQCFSYSPFPKNLAEPYTLALK----TSKRIIYLDIMNPVNPDIQDYEFNESPKLSVP 302

Query: 245 AIHMDM 228
            + M+M
Sbjct: 303 TVEMNM 308


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 613 GTLAGHTDPLVYTNKSDVQSLKPYMYGGW*DGDLLSSRVVTV 488
           GTL       V   +S + SL   ++ GW    LL +RV+ V
Sbjct: 603 GTLLARAGEHVAPMESTIASLLSQLWDGWKKEPLLRARVLAV 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,451
Number of Sequences: 5004
Number of extensions: 59580
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)