Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0791.Seq
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 31 0.77
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 31 1.0
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 28 5.4
04_04_0106 + 22823781-22823878,22824887-22825325,22825578-228257... 28 5.4
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 28 7.2
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 28 7.2
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 27 9.5
01_06_0753 - 31711300-31713066 27 9.5
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 93 GGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHIHMYGGFLEA 260
G +S R R +VL+ RH + L +W HTI A + H+ + EA
Sbjct: 36 GRVLSRRARRRRSSVLAWRHRRCFGGLILQTWKKNHTISAVQQRSHLERFAALDEA 91
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 303 GQYLINPELRARRIVNISQSASIEFCKAF--WFLAESEIMKRVPSLMSSTVAVNKIITIP 476
G +NP R+ +IV+ S + +EFCK W+ + +R +S VN ++ +P
Sbjct: 125 GAVHMNPNRRSDQIVDESCWSDLEFCKQTQNWYCYAKMLAERTAMEEASKRGVNLLVVVP 184
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 259 ASRNPPYIWICLLVFR 212
++RNPP+IW CL +R
Sbjct: 1427 SNRNPPWIWCCLKSYR 1442
>04_04_0106 +
22823781-22823878,22824887-22825325,22825578-22825729,
22825828-22825999
Length = 286
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 378 CKAFWFLAESEIMKRVPSLMSST 446
C + WF+ +S I K+ P+L S T
Sbjct: 117 CWSLWFILQSRIAKKYPALYSGT 139
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 606 SPAIPTLLFTLISLMFSP*SPI 541
SPA P L F L+ LM SP SP+
Sbjct: 420 SPAHPLLAFRLLLLMLSPASPL 441
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 389 KRLAEFYTRRLRYIHDTPSPQLRVDQVL 306
K+LAE Y R+ +H T RV+Q+L
Sbjct: 220 KKLAELYLARIMCLHGTDGQTERVNQIL 247
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 59 ITFRLYLVXHPRGNCFPPNIIHPKN 133
I F YLV H G PPN +H ++
Sbjct: 48 IPFSAYLVLHKSGIPLPPNFLHRRD 72
>01_06_0753 - 31711300-31713066
Length = 588
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 300 GGQYLINPELRARRIVNISQSASIEFCKAFWFLAESEIMKRVP 428
GG+ L A R+V ++ ++++C+ FW L + +++ P
Sbjct: 123 GGRELPGEAAVALRLVEEGKAYAVDWCRLFWELLKMDLVSGKP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,736
Number of Sequences: 37544
Number of extensions: 427975
Number of successful extensions: 1007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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