Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0791.Seq
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)                 31   0.60 
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_26630| Best HMM Match : ig (HMM E-Value=0.0021)                     31   0.79 
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)                     30   1.4  
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          30   1.4  
SB_2946| Best HMM Match : ig (HMM E-Value=6.1e-05)                     30   1.4  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     30   1.8  
SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   29   2.4  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         28   5.6  
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    28   7.4  
SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)                      28   7.4  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_23142| Best HMM Match : T4_deiodinase (HMM E-Value=5.2e-21)         27   9.7  
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)
          Length = 250

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 130 ELFSQADTINQYCFYGRCLGFQFIP 204
           ++  +A+ +++ CFYGR LGFQ  P
Sbjct: 169 QVMIEAEQMDRECFYGRTLGFQHFP 193


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 54  FTSPSDFTWLXTPGGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHI 233
           +T P  F  L TP  T  H T YT      S +    + ++ +   +IHT    +   HI
Sbjct: 111 YTLPFSFCTLLTPHAT--HTTHYTTHIARYSHYTLRTIHIKLLILHAIHTTRYAHYTSHI 168

Query: 234 HMYGGFLEAYYCHGNV 281
             Y  + + +Y H  +
Sbjct: 169 ARYSHYTQ-HYSHSTL 183


>SB_26630| Best HMM Match : ig (HMM E-Value=0.0021)
          Length = 333

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+ + G TV+H  SYT
Sbjct: 156 TPPPTFTWISSQGHTVAHGPSYT 178


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 520 GDLLSSRVVTVNGSGGIVMILLTATVEDIKLGTRFIISLSAKN 392
           GD L  +VVT++GSG +    L  T+E   LG + +++LS  N
Sbjct: 553 GDSLEGKVVTISGSGNVAQYALEKTLE---LGGK-VVTLSDSN 591


>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
          Length = 332

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G TV+H  SYT
Sbjct: 82  TPPPTFTWISPQGHTVAHGPSYT 104


>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G TV+H  SYT
Sbjct: 39  TPPPTFTWISPQGHTVAHGPSYT 61


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G TV+H  SYT
Sbjct: 30  TPPPTFTWIRPQGHTVAHGPSYT 52



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G  V+H  SYT
Sbjct: 379 TPPPTFTWISPQGHIVAHGPSYT 401


>SB_2946| Best HMM Match : ig (HMM E-Value=6.1e-05)
          Length = 200

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G TV+H  SYT
Sbjct: 58  TPPPTFTWISPQGRTVAHGPSYT 80


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 201 TIDARNTKRHIHMYGGFLEAYYCHGNVISSVW 296
           T++   T R  HM  GF++A+Y H +  S VW
Sbjct: 877 TLEGLVTVRTHHMQKGFIKAFYKHQDEHSKVW 908


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -2

Query: 540 CTVGGRTVISFLRGWSPSTVQVVSL*FY*RPPSKTSNWGHASLFRFQLKTKTPCRILYSP 361
           C VG R V+     ++ +T+ +  L F+      T+NW H  ++  + +    C + + P
Sbjct: 458 CVVGLRHVLHTAVRYNITTITIPLLLFHDMTEEMTNNWVHDGVYHVEWRGVAQCTV-HDP 516

Query: 360 TAIYSRY 340
           T    R+
Sbjct: 517 TGDLRRH 523


>SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 72  FTWLXTPGGTVSHRTSYT 125
           FTW+   G TV+HR SYT
Sbjct: 275 FTWIGPQGHTVAHRPSYT 292


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 500 GGHRQRFRWYRYDF--INGHRRRHQTGDTLHYFAFS*KPKRLAEFYTRRLRYIHDTPSPQ 327
           GG+R  F  Y+  F  I G R+ H     + Y A    P+ +AE  +  ++   D PSPQ
Sbjct: 315 GGNRITFGSYKGPFPGIRGTRKTH----LIDYCAAV--PEHMAELPSSVIQPSQDEPSPQ 368

Query: 326 LRVDQVLPSG 297
             + ++LP G
Sbjct: 369 GPMTEMLPKG 378


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 243 GGFLEAYYCHGNVISSVWTGGQYLINPELRA---RRIVNISQSA 365
           GG+++A   H N  SSVW GG      ELR+   RR+V +  +A
Sbjct: 642 GGWVDAIRLHTNFKSSVWMGGSGGDLYELRSPEGRRMVGLFGTA 685


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 107 PPNIIHPKNCSLKPTQ*ISIASTEDV 184
           PP +IHP NCS K     S+  T+DV
Sbjct: 637 PPELIHPSNCSSK-----SMIKTDDV 657


>SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYT 125
           T P  FTW+   G  V+H  SYT
Sbjct: 30  TPPPTFTWISPQGHIVAHGPSYT 52


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 95   GNCFPPNIIHPKNCSLKPTQ*ISIASTEDVLGFNSYHRCAE 217
            GN  P  ++ PK   LKP +    A TED L   +  RCAE
Sbjct: 2201 GNRTPRRLLFPKGALLKPERRRLSAGTEDAL--VAVTRCAE 2239


>SB_23142| Best HMM Match : T4_deiodinase (HMM E-Value=5.2e-21)
          Length = 263

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 390 WFLAESEIMKRVPSLMSSTVAVNKIITIPP--EPLTVTTLEERRSPSY 527
           WFL  +E +++  SLM    A  K++       PL V T+E   + +Y
Sbjct: 141 WFLKNNETIRQHKSLMERCDAAKKLLGTKTLRTPLLVDTMENAANEAY 188


>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +3

Query: 96  GTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSI------HTIDARNTKRHIHMYGG 248
           G  SHR SY+  T++  R+++  ++  + S V++      H I  R    H+ M  G
Sbjct: 74  GRFSHRQSYSHVTIMKGRYSQVTMMKDRYSHVTMMKGRYSHLIIKRGKYSHVTMRKG 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,397,563
Number of Sequences: 59808
Number of extensions: 478122
Number of successful extensions: 1213
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)