Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0791.Seq
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    56   2e-08
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/69 (37%), Positives = 42/69 (60%)
 Frame = +3

Query: 270 HGNVISSVWTGGQYLINPELRARRIVNISQSASIEFCKAFWFLAESEIMKRVPSLMSSTV 449
           HG  I S+   G++ ++PE RA RI+ +++ A I+FCK FW L  SE+   +P      +
Sbjct: 257 HG-AIGSLINTGRFFLSPEQRAERIIKVTKEADIDFCKGFWNL--SELSNNMPKFFCPNM 313

Query: 450 AVNKIITIP 476
           A+N++  IP
Sbjct: 314 ALNELREIP 322



 Score = 35.9 bits (79), Expect = 0.024
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 115 HHTPEELFSQADTINQYCFYGRCLGFQFIPSMRGILKGISICMAGFS 255
           + T +E+    + ++   F+GR +GFQF PS+  I + I + +A +S
Sbjct: 204 YETYQEILRVMEKLDSSVFFGRPIGFQFSPSINKIFRIIGVVLATYS 250


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 314 QVLPSGPNRANHVSVTVVRFEKPAIHMDMPFSIPRIDGMN*NPRHLP 174
           Q+LPSGPN+ +H    +V+ E P+     P  + +       P++ P
Sbjct: 334 QLLPSGPNQGHHSFQVMVKQEPPSQFTPQPHPMQQTPQQQVLPQYPP 380


>Z82287-1|CAB05316.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK550.1 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 186 WVSIHTIDARNTKRH-IHMYGGFLEAYYCHGNVISSVWTG--GQYLINPELRARRIVNIS 356
           W  I   DA  T R  +    GF+  Y+C+GN I+  +    G YL+   +  + +    
Sbjct: 51  WFRIQFCDASRTARAAVTTPIGFIFLYFCYGNEIAHFFINGFGSYLLMISVLPKHV---- 106

Query: 357 QSASIEFCKAFWFL 398
             A   F  A+ FL
Sbjct: 107 HKAVFSFAMAYLFL 120


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 186 WVSIHTIDA-RNTKRHIHMYGGFLEAYYCHGNVISSVWTGG 305
           W  +   DA R T+  +    G +  Y+C+GN I+ ++  G
Sbjct: 51  WFRVQFCDASRTTRAAVTTSVGLIFTYFCYGNAIAHLFING 91


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 89  PRGNCFPPNIIHPKNCSLKPTQ*I-SIASTEDVLGFNSYHR 208
           P G+ +PPN+++ K  ++ P + I S   +  V     YH+
Sbjct: 588 PEGSIYPPNLMNKKKININPIKKIPSSTPSTPVENIEEYHK 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,727
Number of Sequences: 27780
Number of extensions: 338488
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)