Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0791.Seq
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01270.1 68416.m00033 pectate lyase family protein similar to...    37   0.010
At3g47790.1 68416.m05206 ABC transporter family protein contains...    29   2.0  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    28   4.5  
At3g42723.1 68416.m04459 hypothetical protein                          28   6.0  

>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +3

Query: 57  TSPSDFTWLXTPGGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHIH 236
           TSP D   +    GT+ H         +  +H+ S+ L +++   S  TIDAR    HI 
Sbjct: 167 TSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHI- 225

Query: 237 MYGGFLEAYYCHGNVI 284
            YG  +   Y H  +I
Sbjct: 226 AYGAGITMQYVHNIII 241


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 216 NTKRHIHMYGGFLEAYYCHGNVIS-SVWTGGQY----LINPE--LRARRIVNISQSASIE 374
           N  + I+ + G  +    +GN ++ SVW    Y    ++ P   +R  R+VN++ +A +E
Sbjct: 228 NPDKKINEFAGAFDFQNTNGNNLNVSVWYNSTYKNDTVVRPMALIRVPRLVNLASNAYLE 287

Query: 375 FCKAFWFLAESEIMKRVP 428
           F K        E +K +P
Sbjct: 288 FLKGSETKILFEYVKEMP 305


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 121 TPEELFSQADTINQYCFYGRCLGFQFIPSMRGI 219
           TP+++F   D +N++  Y RC G      M G+
Sbjct: 276 TPDQVFDARDLVNRHHGYKRCKGANAADFMMGV 308


>At3g42723.1 68416.m04459 hypothetical protein
          Length = 806

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 442 EDIKLGTRFIISLSAKNQNALQNSILADCDIFTIRLA 332
           +D++ GT+ +   S K Q  ++N + +DC I    LA
Sbjct: 560 KDLEQGTKRVKMRSEKEQGGMRNELESDCGIVAYYLA 596


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,297
Number of Sequences: 28952
Number of extensions: 327906
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)