Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0790.Seq
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.51 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.3  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 157 RCQDNLSWTLPCSLVARSAKCPSGQIEQ 74
           R  ++LSW  PCS+ + S++    QI Q
Sbjct: 172 RTGNSLSWNNPCSINSTSSQPVGTQIHQ 199


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 188  STDGNSPYQDGRFELSSTLCLHNSCKKLPNARVQSRPDPYLMVTVGKKTEN 340
            ST  N+P     F   S   +       PN   Q+RP   L    GK  EN
Sbjct: 1403 STSSNNP-SISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNGKANEN 1452


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 188  STDGNSPYQDGRFELSSTLCLHNSCKKLPNARVQSRPDPYLMVTVGKKTEN 340
            ST  N+P     F   S   +       PN   Q+RP   L    GK  EN
Sbjct: 1403 STSSNNP-SISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPNGKANEN 1452


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 272 PNARVQSRPDPYLMVTVGKKTENTAVQ 352
           PN++  + P P   + V ++ EN   Q
Sbjct: 221 PNSKKSATPSPPPQLEVNERKENLTCQ 247


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 257 SCKKLPNARVQSR 295
           +C+ LPN+R  SR
Sbjct: 75  NCRDLPNSRCNSR 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,138
Number of Sequences: 336
Number of extensions: 2891
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)