Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0790.Seq
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    37   0.002
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    29   0.72 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.72 
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   3.8  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.7  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   6.7  

>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 166 VDKRCQDNLSWTLPCSLVARSAKCPSGQIEQLEICPMNTCRGNHRSECPSQGP 8
           VD+  Q+NLS +LP  +++R      G+++Q +I P      N     PS GP
Sbjct: 173 VDQSYQNNLSHSLPVPMISREINLKKGKLDQAKIPPPLVSTLNRNELFPSNGP 225


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 454 SSFLVENLDVKRVDFRVLDEERISDLIHGIVGSQLHGGVFGFFANRH 314
           S+F V+ + +K VDF  LD+E+    IH      LH      F NRH
Sbjct: 689 SAFNVDCITLKHVDFTYLDDEKFRATIHDDNTFTLH------FFNRH 729


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 105 DLATSEHGKVQLRLSWHRLSTDVTELSRALTETLLIKTGDLSSAVLSV--YITRVRSYRT 278
           D +TS HG+   R +W+   T++      ++    + T D SS  LS   ++ RV S   
Sbjct: 789 DASTSLHGQTAGRFAWYGTLTNIDPGIHRIS-LKSVPTSDFSSRTLSTDNFLIRVGSTNN 847

Query: 279 PV 284
           P+
Sbjct: 848 PI 849


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +2

Query: 263 KKLPNARVQSRPDPYLMVTVGKKTENTAVQLRT-DDPVYEIGYSFLVQNPEIDTLDVKVL 439
           K LPN  +  +  PY +  VG+  + T    R+  +P +     F + +     + + V 
Sbjct: 17  KNLPNKALVGKQSPYCVCRVGEVVKRTQTDKRSGQEPSWNAVLEFNIPSESYHIMKITVF 76

Query: 440 DQ---KTGSQLGQLFYSISALLKEK 505
            +   K    +G    S    +KE+
Sbjct: 77  HEGFRKHPHLIGDTVLSFEKAMKEE 101


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 66  ISSCSIWP----LGHLADLATSEHGKVQLRLSWHRLSTDVTELSRALTETLLIKTGDLSS 233
           I+ C  WP         D+  +E G     +   R   DVT +S+ L  ++    G +  
Sbjct: 370 ITHCWFWPKFSEFLKPRDVLITETGTANFGVLDCRFPKDVTAISQVLWGSIGYSVGAMFG 429

Query: 234 AVLSVYITRVRSYRT 278
           AVL+V+ ++    RT
Sbjct: 430 AVLAVHDSKEPDRRT 444


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 378 SYTGSSVRSCTAVFSVFLPTVTIR*GSGRDCTRAFGSFLHE 256
           SY G +V++ TA  S FL  V +   +   C R+  SF  +
Sbjct: 544 SYVGGAVQNMTAKASEFLSVVDLNMFARNFCDRSCESFTRQ 584


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 238 TAELKSPVLIRRVSVSARLNSVTSVDK---RCQDNLSWTLPCSLVARSAKCPSG 86
           TA ++   L  + S+ AR ++++ V+    RC++     LPC       +C SG
Sbjct: 307 TATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLPCGEHTCKKRCHSG 360


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 290 SRPDPYLMVTVGKKTENTAVQLRTDDPVYEIGYSFLVQNPEIDTLDVKVLDQ-KTGSQLG 466
           S P P    + GK  +N    LR D P Y+     + +  EID +D   L    TG    
Sbjct: 310 SLPKPVHGTSNGKGKKNPV--LREDQPEYQRAVRRMQRKKEIDLMDEDYLPSLLTGVTKD 367

Query: 467 QLFYSISA 490
           +++  I A
Sbjct: 368 RMYVQIGA 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,480
Number of Sequences: 5004
Number of extensions: 49128
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)