Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0790.Seq
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)                        33   0.19 
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     32   0.43 
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)                    29   4.0  
SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11)           28   5.3  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.3  

>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
          Length = 583

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 263 KKLPNARVQSRPDPYLMVTVGKKTENTAVQLRTDDPVYEIGYSFLVQN-PEIDTLD 427
           + LP      + DPY +V VG + + TAVQ  T +P +     F V   P++  +D
Sbjct: 59  RNLPVMDPNGKSDPYCIVAVGDQEQRTAVQYNTINPEWRETLQFEVAGVPQLMQID 114


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 299 DPYLMVTVGKKTENTAVQLRTDDPVYEIGYSFLVQNPEIDTLDVKVLDQ 445
           DPY +V VG +   T  +    DPV++  +   + N E   L  KV D+
Sbjct: 301 DPYCIVEVGAQKYRTKTKKSNCDPVWKETFEAFIDNTEGQELFCKVYDE 349


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 202 VSVSARLNSVTSVDKRCQDNLSWTLPCSLVARS 104
           V VS  L  ++SVDK   +  SW L CSL+  S
Sbjct: 409 VIVSTILPLLSSVDKVTAEQTSWELVCSLLGES 441


>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
          Length = 808

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 AIPSGSLPDGDGWQKNRKHRRATANRRSR 372
           A+ + + P GDG+ K RKHR   +N  +R
Sbjct: 370 ALINANSPQGDGFLKKRKHRHIPSNGVTR 398


>SB_11652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 133 TLPCSLVARSAKCPSGQIEQLEICPMNTCRGNHRSECPSQG 11
           TLP S+ A ++K  +G      +   N   G  +SECP+ G
Sbjct: 16  TLPPSVAAPASKVQAGPPSGCPMHQSNQTSGEWKSECPASG 56


>SB_14386| Best HMM Match : Ion_trans_2 (HMM E-Value=2.4e-11)
          Length = 556

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 242 LCLHNSCKKLPNARVQSRPDPYLMVTVGKKTENTAVQLRTDD 367
           LC  N  KK P+ RV+ R DP   +    + ENT ++ +T D
Sbjct: 330 LCCQN--KKKPDHRVRRRCDPTRGLPQQTRHENTTIEDQTQD 369


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 162  INDAKIISVGLYRVRLLQGLPSVQAAK 82
            I  A I+++ +YR+RLL G P + A K
Sbjct: 2703 IRAAGIVAMAIYRLRLLTGDPDITALK 2729


>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 522

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 241 STAELKSPVLIRRVSVSARLNSVTSVDK---RCQDNLSWTLPCSLVARSAKCPSGQIEQ 74
           S A  ++P L      S  L+SV S D    RC  +L W   CS +A SA    G I +
Sbjct: 291 SVANKRNPSLHEYEINSQILSSVDSHDYLGVRCSRDLRWGSHCSKIASSASSTLGIIRR 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,421,814
Number of Sequences: 59808
Number of extensions: 392081
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)